GitHub topics: 2-photon
SWC-Advanced-Microscopy/BakingTray
Serial-section automated anatomy extension for ScanImage
Language: MATLAB - Size: 2.3 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 12 - Forks: 5
flatironinstitute/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Language: Python - Size: 571 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 660 - Forks: 380
NeLy-EPFL/utils2p
Utility functions for data generated with ThorImage and ThorSync.
Language: Python - Size: 6.5 MB - Last synced at: about 9 hours ago - Pushed at: 6 months ago - Stars: 1 - Forks: 2
hjmh/fly2p
utility functions for analyzing (fly) calcium imaging data
Language: Jupyter Notebook - Size: 39.6 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 3 - Forks: 7
phflot/flow_registration
Flow-Registration toolbox for 2P motion compensation
Language: MATLAB - Size: 4.76 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 21 - Forks: 2
ankushgpta2/2PhotonProcessor
Code for Important Processing Steps For .Tiff or .Raw Video Files Acquired From 2-Photon Imaging System + Completely Automated and With NWB Schema (.HDF5) Capability
Language: MATLAB - Size: 119 KB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0
BaselLaserMouse/LaserControl
MATLAB control classes for lasers
Language: MATLAB - Size: 193 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 1
SWC-Advanced-Microscopy/SimpleMScanner
Simple MATLAB scanning software for demo purposes
Language: MATLAB - Size: 679 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 2
SWC-Advanced-Microscopy/SimplePyScanner
Simple Python scanning software for demo purposes
Language: Python - Size: 146 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1
tenss/image-analysis
Examples illustrating basic stages of analyzing calcium imaging data
Language: MATLAB - Size: 61.5 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1
lauraluebbert/ThorImage-Sync_2P-analysis
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
Language: Jupyter Notebook - Size: 58.6 KB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
flosfor/pvbs
PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging
Language: MATLAB - Size: 123 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0
CommanderPho/phoCrossDayAlignment
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
Language: MATLAB - Size: 8.01 MB - Last synced at: 6 days ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
MamiyaA/NeuralCodingOfLegProprioception_CalciumImagingAnalyses
Matlab scripts for analyzing calcium imaging data presented in "Neural Coding of Leg Proprioception in Drosophila" (Mamiya, Gurung, and Tuthill (2018) Neuron: DOI:https://doi.org/10.1016/j.neuron.2018.09.009)
Language: MATLAB - Size: 101 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
jefferis/scanimage
read and analyse 2 photon images from ScanImage
Language: R - Size: 199 KB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
shih-liang/CaImAn-pkgbuild
PKGBUILD of CaImAn for Archlinux
Language: Shell - Size: 13.7 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
