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GitHub / novapyth / jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/novapyth%2Fjannovar
Fork of charite/jannovar
Stars: 0
Forks: 0
Open Issues: 0
License: other
Language:
Repo Size: 23.8 MB
Dependencies:
65
Created: over 2 years ago
Updated: 9 months ago
Last pushed: over 2 years ago
Last synced: 9 months ago
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Dependencies
.github/workflows/ci.yml
actions
- actions/checkout v2 composite
- actions/setup-java v2 composite
jannovar-cli/pom.xml
maven
- org.projectlombok:lombok [1.18.10,) provided
- com.fasterxml.jackson.core:jackson-core [2.9.9.1,)
- com.fasterxml.jackson.core:jackson-databind [2.9.9.1,)
- com.github.samtools:htsjdk ${htsjdk.version}
- com.google.code.gson:gson 2.3.1
- com.google.guava:guava ${guava.version}
- com.sparkjava:spark-core 2.8.0
- de.charite.compbio:jannovar-core 0.39-SNAPSHOT
- de.charite.compbio:jannovar-filter 0.39-SNAPSHOT
- de.charite.compbio:jannovar-htsjdk 0.39-SNAPSHOT
- de.charite.compbio:jannovar-stats 0.39-SNAPSHOT
- de.charite.compbio:jannovar-vardbs 0.39-SNAPSHOT
- net.sourceforge.argparse4j:argparse4j 0.7.0
- org.apache.commons:commons-csv 1.4
- org.apache.logging.log4j:log4j-api ${log4j.version}
- org.apache.logging.log4j:log4j-core ${log4j.version}
- org.ini4j:ini4j 0.5.1
- org.slf4j:slf4j-simple ${slf4j.version}
jannovar-core/pom.xml
maven
- com.google.guava:guava ${guava.version}
- commons-io:commons-io 2.7
- commons-net:commons-net 3.3
- de.charite.compbio:jannovar-hgvs 0.39-SNAPSHOT
- org.apache.commons:commons-compress [1.18,)
- org.ini4j:ini4j 0.5.1
jannovar-filter/pom.xml
maven
- com.github.samtools:htsjdk ${htsjdk.version}
- com.google.guava:guava ${guava.version}
- de.charite.compbio:jannovar-core 0.39-SNAPSHOT
- de.charite.compbio:jannovar-htsjdk 0.39-SNAPSHOT
- org.apache.logging.log4j:log4j-api ${log4j.version}
- org.apache.logging.log4j:log4j-core ${log4j.version}
- org.slf4j:slf4j-simple ${slf4j.version}
jannovar-hgvs/pom.xml
maven
- com.google.guava:guava ${guava.version}
- org.antlr:antlr4-runtime ${antlr.version}
jannovar-htsjdk/pom.xml
maven
- com.github.samtools:htsjdk ${htsjdk.version}
- com.google.guava:guava ${guava.version}
- commons-io:commons-io 2.7
- commons-net:commons-net 3.3
- de.charite.compbio:jannovar-core 0.39-SNAPSHOT
- de.charite.compbio:jannovar-hgvs 0.39-SNAPSHOT
jannovar-stats/pom.xml
maven
- com.github.samtools:htsjdk ${htsjdk.version}
- com.google.guava:guava ${guava.version}
- de.charite.compbio:jannovar-core 0.39-SNAPSHOT
- de.charite.compbio:jannovar-htsjdk 0.39-SNAPSHOT
- org.apache.logging.log4j:log4j-api ${log4j.version}
- org.apache.logging.log4j:log4j-core ${log4j.version}
- org.ini4j:ini4j 0.5.1
- org.slf4j:slf4j-simple ${slf4j.version}
jannovar-vardbs/pom.xml
maven
- com.github.samtools:htsjdk ${htsjdk.version}
- com.google.guava:guava ${guava.version}
- com.h2database:h2 ${h2.version}
- de.charite.compbio:jannovar-core 0.39-SNAPSHOT
- de.charite.compbio:jannovar-htsjdk 0.39-SNAPSHOT
- org.apache.logging.log4j:log4j-api ${log4j.version}
- org.apache.logging.log4j:log4j-core ${log4j.version}
- org.ini4j:ini4j 0.5.1
- org.slf4j:slf4j-simple ${slf4j.version}
pom.xml
maven
- org.slf4j:slf4j-api 1.7.25
- org.apache.logging.log4j:log4j-core 2.17.0 test
- org.apache.logging.log4j:log4j-slf4j-impl 2.17.0 test
- org.junit.jupiter:junit-jupiter 5.7.2 test
- org.junit.jupiter:junit-jupiter-params 5.7.2 test