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Package Usage: maven: de.charite.compbio:jannovar-core

jannovar-core is a library for the functional annotation of genomic variants
28 versions
Latest release: over 1 year ago
8 dependent packages

View more package details: https://packages.ecosyste.ms/registries/repo1.maven.org/packages/de.charite.compbio:jannovar-core

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/charite%2Fjannovar

Dependent Repos 12

varfish-org/varfish-annotator

Annotate variants for import into VarFish server.

${jannovar.version} varfish-annotator-cli/pom.xml
${jannovar.version} varfish-annotator-core/pom.xml

Size: 38.2 MB - Last synced: 3 months ago - Pushed: 7 months ago

TheJacksonLaboratory/LIRICAL

LIkelihood Ratio Interpretation of Clinical AbnormaLities

lirical-core/pom.xml
0.35 pom.xml

Size: 30.1 MB - Last synced: 11 days ago - Pushed: 11 days ago

charite/jannovar

Annotation of VCF variants with functional impact and from databases (executable+library)

0.40-SNAPSHOT jannovar-cli/pom.xml
0.40-SNAPSHOT jannovar-filter/pom.xml
0.40-SNAPSHOT jannovar-htsjdk/pom.xml
0.40-SNAPSHOT jannovar-stats/pom.xml
0.40-SNAPSHOT jannovar-vardbs/pom.xml

Size: 23.6 MB - Last synced: 5 days ago - Pushed: 5 days ago

TheJacksonLaboratory/isopretGO

Isoform function prediction and interpretation

${jannovar.version} isopret-core/pom.xml

Size: 15.9 MB - Last synced: 3 months ago - Pushed: 3 months ago

monarch-initiative/HpoCaseAnnotator

Next-generation Biocuration App for annotating cases and PhenoPackets

hpo-case-annotator-core/pom.xml
0.36 pom.xml

Size: 12.1 MB - Last synced: 11 days ago - Pushed: 2 months ago

mr-tijn/boinq2

(in progress) JHipster based boinq edition

0.16 pom.xml

Size: 17.5 MB - Last synced: 10 days ago - Pushed: about 6 years ago

monarch-initiative/SilentGenes

"Silent companion" library for performing genome arithmetics with genes and transcripts using Svart

0.35 pom.xml
silent-genes-jannovar/pom.xml

Size: 477 KB - Last synced: 9 months ago - Pushed: about 1 year ago

TheJacksonLaboratory/Squirls

Interpretable prioritization of splice variants in diagnostic next-generation sequencing

0.35 pom.xml
squirls-cli/pom.xml
squirls-ingest/pom.xml

Size: 13.5 MB - Last synced: 2 months ago - Pushed: 2 months ago

ielis/HyperUtil

Hyper-useful Java utilities for bioinformatics projects

${jannovar.version} hyperutil-reference/pom.xml

Size: 81.1 KB - Last synced: 10 months ago - Pushed: over 3 years ago

charite/jannovar_tutorial 📦

Jannovar Tutorial Applications

0.14 jgenecount/pom.xml
0.14 jlink/pom.xml
0.14 jped/pom.xml
0.14 jqc/pom.xml

Size: 279 KB - Last synced: about 1 month ago - Pushed: almost 9 years ago

ibn-salem/position_effect

Prediction of Position Effects of Apparently Balanced Human Chromosome Rearrangements

0.36 phenomatch.core/pom.xml

Size: 132 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

GeneDx/jannovar Fork of charite/jannovar

Annotation of VCF variants with functional impact and from databases (executable+library)

0.42-SNAPSHOT jannovar-cli/pom.xml
0.42-SNAPSHOT jannovar-filter/pom.xml
0.42-SNAPSHOT jannovar-htsjdk/pom.xml
0.42-SNAPSHOT jannovar-stats/pom.xml
0.42-SNAPSHOT jannovar-vardbs/pom.xml

Size: 21.4 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

PEDIA-Charite/exome-simulator

Exome simulator to generate "synthetic" exomes and add the variant information to the original jsons

0.20 pom.xml

Size: 83 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

Habush/variant-ann

Functional annotation of variants using jannovar library

0.36-SNAPSHOT pom.xml

Size: 302 KB - Last synced: 9 months ago - Pushed: about 4 years ago

TQRG/BugSwarm

Critical Review of BugSwarm for Fault Localization and Program Repair

0.18-SNAPSHOT BugSwarm/charite-jannovar-155352335/buggy_files/jannovar-cli/pom.xml
0.23-SNAPSHOT BugSwarm/charite-jannovar-249719464/buggy_files/jannovar-cli/pom.xml
0.23-SNAPSHOT BugSwarm/charite-jannovar-249719464/buggy_files/jannovar-filter/pom.xml
0.23-SNAPSHOT BugSwarm/charite-jannovar-249719464/buggy_files/jannovar-htsjdk/pom.xml
0.23-SNAPSHOT BugSwarm/charite-jannovar-249719464/buggy_files/jannovar-stats/pom.xml
0.23-SNAPSHOT BugSwarm/charite-jannovar-249719464/buggy_files/jannovar-vardbs/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561983/buggy_files/jannovar-cli/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561983/buggy_files/jannovar-filter/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561983/buggy_files/jannovar-htsjdk/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561983/buggy_files/jped-cli/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561984/buggy_files/jannovar-cli/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561984/buggy_files/jannovar-filter/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561984/buggy_files/jannovar-htsjdk/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561984/buggy_files/jped-cli/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561985/buggy_files/jannovar-cli/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561985/buggy_files/jannovar-filter/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561985/buggy_files/jannovar-htsjdk/pom.xml
0.16-SNAPSHOT BugSwarm/charite-jannovar-78561985/buggy_files/jped-cli/pom.xml

Size: 1.93 GB - Last synced: 12 days ago - Pushed: almost 5 years ago

tdurieux/pattern-detector-experiment

0.18-SNAPSHOT benchmark/bugswarm/charite-jannovar-155352335/buggy_files/jannovar-cli/pom.xml
0.23-SNAPSHOT benchmark/bugswarm/charite-jannovar-249719464/buggy_files/jannovar-cli/pom.xml
0.23-SNAPSHOT benchmark/bugswarm/charite-jannovar-249719464/buggy_files/jannovar-filter/pom.xml
0.23-SNAPSHOT benchmark/bugswarm/charite-jannovar-249719464/buggy_files/jannovar-htsjdk/pom.xml
0.23-SNAPSHOT benchmark/bugswarm/charite-jannovar-249719464/buggy_files/jannovar-stats/pom.xml
0.23-SNAPSHOT benchmark/bugswarm/charite-jannovar-249719464/buggy_files/jannovar-vardbs/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561983/buggy_files/jannovar-cli/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561983/buggy_files/jannovar-filter/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561983/buggy_files/jannovar-htsjdk/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561983/buggy_files/jped-cli/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561984/buggy_files/jannovar-cli/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561984/buggy_files/jannovar-filter/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561984/buggy_files/jannovar-htsjdk/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561984/buggy_files/jped-cli/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561985/buggy_files/jannovar-cli/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561985/buggy_files/jannovar-filter/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561985/buggy_files/jannovar-htsjdk/pom.xml
0.16-SNAPSHOT benchmark/bugswarm/charite-jannovar-78561985/buggy_files/jped-cli/pom.xml

Size: 123 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

novapyth/jannovar Fork of charite/jannovar

Annotation of VCF variants with functional impact and from databases (executable+library)

0.39-SNAPSHOT jannovar-cli/pom.xml
0.39-SNAPSHOT jannovar-filter/pom.xml
0.39-SNAPSHOT jannovar-htsjdk/pom.xml
0.39-SNAPSHOT jannovar-stats/pom.xml
0.39-SNAPSHOT jannovar-vardbs/pom.xml

Size: 23.8 MB - Last synced: 8 months ago - Pushed: over 2 years ago

Bin-Guan/Squirls Fork of TheJacksonLaboratory/Squirls

Interpretable prioritization of splice variants in diagnostic next-generation sequencing

0.35 pom.xml
squirls-ingest/pom.xml

Size: 12.3 MB - Last synced: 8 months ago - Pushed: over 2 years ago