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GitHub / varfish-org / varfish-annotator

Annotate variants for import into VarFish server.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/varfish-org%2Fvarfish-annotator

Stars: 5
Forks: 3
Open Issues: 6

License: mit
Language: Java
Repo Size: 38.2 MB
Dependencies: 22

Created: about 5 years ago
Updated: 4 months ago
Last pushed: 7 months ago
Last synced: 4 months ago

Files

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Readme

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Dependencies

pom.xml maven

varfish-annotator-cli/pom.xml maven

com.beust:jcommander ${jcommander.version}
com.github.bihealth:varfish-annotator-core 0.21
com.github.samtools:htsjdk ${htsjdk.version}
com.h2database:h2 ${h2.version}
de.charite.compbio:jannovar-core ${jannovar.version}
de.charite.compbio:jannovar-htsjdk ${jannovar.version}

.github/workflows/check-trailers.yml actions

actions/checkout v2 composite
bihealth/action-require-trailers v1.1.0 composite

.github/workflows/ci.yml actions

actions/checkout v2 composite
actions/setup-java v2 composite
marocchino/sticky-pull-request-comment v2.2.0 composite

varfish-annotator-core/pom.xml maven

com.github.samtools:htsjdk ${htsjdk.version}
com.google.code.externalsortinginjava:externalsortinginjava ${externalsortinginjava.version}
de.charite.compbio:jannovar-core ${jannovar.version}
de.charite.compbio:jannovar-htsjdk ${jannovar.version}
org.json:json ${json.version}