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GitHub / welch-lab / liger
R package for integrating and analyzing multiple single-cell datasets
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/welch-lab%2Fliger
Stars: 365
Forks: 78
Open Issues: 28
License: gpl-3.0
Language: R
Repo Size: 193 MB
Dependencies:
39
Created: about 6 years ago
Updated: 11 days ago
Last pushed: about 2 months ago
Last synced: 9 days ago
Commit Stats
Commits: 504
Authors: 18
Mean commits per author: 28.0
Development Distribution Score: 0.659
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/welch-lab/liger
Topics: nonnegative-matrix-factorization, r, single-cell
Files
Dependencies
- Matrix * depends
- cowplot * depends
- methods * depends
- patchwork * depends
- FNN * imports
- RANN * imports
- Rcpp >= 0.12.10 imports
- Rtsne * imports
- doParallel * imports
- dplyr * imports
- foreach * imports
- ggplot2 * imports
- ggrepel * imports
- grid * imports
- hdf5r * imports
- ica * imports
- irlba * imports
- mclust * imports
- parallel * imports
- plyr * imports
- psych * imports
- riverplot * imports
- rlang * imports
- scattermore >= 0.7 imports
- stats * imports
- utils * imports
- uwot * imports
- AnnotationDbi * suggests
- GenomicRanges * suggests
- IRanges * suggests
- S4Vectors * suggests
- Seurat * suggests
- fgsea * suggests
- knitr * suggests
- org.Hs.eg.db * suggests
- reactome.db * suggests
- reticulate * suggests
- rmarkdown * suggests
- testthat * suggests