GitHub topics: bioimage
Euro-BioImaging/EuBI-Bridge
A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.
Language: Python - Size: 212 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 3 - Forks: 0
brunicardoso/BioPrograma
Jupyter Notebooks e codigos para analise de bioimagens e dados biologicos utilizados no meu canal BioPrograma - https://www.youtube.com/channel/UCbJAU7N9FYvwkdgSwD_1S4Q
Language: Jupyter Notebook - Size: 34.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
Euro-BioImaging/ngff_workshop
Training website for the OME-Zarr format and the tooling around it.
Language: HTML - Size: 11.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
Euro-BioImaging/BatchConvert
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Language: Python - Size: 10.7 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 21 - Forks: 3
Euro-BioImaging/OME_Zarr_Tools
Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023
Language: Shell - Size: 7.46 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
kumeS/BioImageDbs
Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub in Bioconductor)
Language: HTML - Size: 111 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1
