GitHub topics: bioinformatics-workflow
allytrope/variant-analysis
A Snakemake pipeline for variant calling of genomic FASTQ data using GATK
Language: Jupyter Notebook - Size: 4.46 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 0
oicr-gsi/sarsCoV2Analysis
Classify samples as being either SARS-CoV-2 positive or negative, identify the strain of virus, and produce statistics about the mapping.
Language: WDL - Size: 188 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
ruppinlab/tcga-wgs-kraken-microbial-quant
Kraken2 + Bracken based pipeline for classifying and quantifying microbial reads from GDC TCGA WGS data
Language: Python - Size: 21.7 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 1
KenSaville/Variant-Caller
A Latch Bio workflow to call DNA sequence variants
Language: Python - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
mrmrwinter/isoseq_processing
A snakemake workflow to automate the IsoSeq3 pipeline from Pacific Biosciences
Size: 14.6 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
icaromsc/WGCA
JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes
Language: Python - Size: 629 MB - Last synced at: 6 months ago - Pushed at: about 5 years ago - Stars: 8 - Forks: 2
