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GitHub topics: biomedical-nlp

BIDS-Xu-Lab/Me-LLaMA

A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

Language: Python - Size: 229 KB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 147 - Forks: 17

tznurmin/TEA_ft

Fine-tune with TEA

Language: Python - Size: 10.7 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

Sufiyaan-001/Bio-Medical-NER

About Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning

Language: Python - Size: 35.2 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

ritaranx/BMRetriever

This is the code for our paper "BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers".

Language: Python - Size: 728 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 12 - Forks: 2

yuzhimanhua/Multi-BioNER

Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)

Language: Python - Size: 157 KB - Last synced at: 10 months ago - Pushed at: 12 months ago - Stars: 129 - Forks: 28

nlpie-research/Compact-Biomedical-Transformers

This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in the paper "On The Effectiveness of Compact Biomedical Transformers"

Language: Python - Size: 43.9 KB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 16 - Forks: 3

ieeta-pt/BC8-SympTEMIST

BioCreative VIII track 2

Language: Python - Size: 569 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

YaoXinZhi/Cancer-Alterome

Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.

Language: Python - Size: 1.56 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

YaoXinZhi/PheSeq

PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies

Language: Python - Size: 102 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 2

ieeta-pt/MedProcNER

Language: Python - Size: 8.43 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ieeta-pt/PatientFM

Patient Family History extraction tool

Language: Python - Size: 54.3 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 2

ieeta-pt/BioASQ_11B

Language: Shell - Size: 52.7 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

WGLab/Bioformer

Bioformer: an efficient BERT model for biomedical text mining

Size: 29.3 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 45 - Forks: 5

avi-otterai/RadiologyQA

MSR Cambridge Internship Summer 2023

Language: Vue - Size: 1.97 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0