sebi06/czitools

This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.

Language: Python - Size: 388 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 7 - Forks: 3

chanzuckerberg/blessclient

Go client to negotiate SSH certificates

Language: Go - Size: 18.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 62 - Forks: 17

Edgar-La/Procesamiento_digital_de_imagenes-Microscopia_confocal

Language: MATLAB - Size: 41 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 2

zeissmicroscopy/ZEN_Python_OAD_workshop

Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics

Language: Jupyter Notebook - Size: 428 MB - Last synced at: 5 months ago - Pushed at: 8 months ago - Stars: 11 - Forks: 1

nlawlor/PBMC_CITEseq

CITE-seq profiling of human PBMCs at baseline and activation conditions

Language: R - Size: 919 KB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 4 - Forks: 1

greenelab/czi-cancer-data

Downloading and processing pipelines used for single cell gene expression assays of human tumor biopsies

Language: Shell - Size: 9.77 KB - Last synced at: 8 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2

greenelab/czi-rfa

Application to "Collaborative Computational Tools for the Human Cell Atlas" https://chanzuckerberg.com/initiatives/rfa

Size: 967 KB - Last synced at: 10 months ago - Pushed at: almost 7 years ago - Stars: 7 - Forks: 10

greenelab/czi-hca-report

A repository that collects our findings from our efforts under the CZI/HCA project.

Language: CSS - Size: 14.4 MB - Last synced at: 10 months ago - Pushed at: almost 6 years ago - Stars: 3 - Forks: 2

ptahmose/WolframLibraryLink_libCZI

read CZI-documents from Wolfram Language

Language: CMake - Size: 11.9 MB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

peterlionelnewman/czi2png

converts your czi images to pngs

Language: Python - Size: 250 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

elhuhdron/pylibczi

Python module utilizing libCZI for reading Zeiss CZI files.

Language: Python - Size: 78.1 KB - Last synced at: 13 days ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 8

zeiss-microscopy/libCZI 📦

Open Source Cross-Platform C++ library to read CZI image files

Language: C++ - Size: 15 MB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 70 - Forks: 19

magnostherobot/czi-tools

Speedy Carl Zeiss Image (.czi) Divination

Language: C - Size: 153 KB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 4

sebi06/czi_playground

Small python package to simplify reading CZI Image Metadata (*.czi)

Language: Python - Size: 56.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1

greenelab/czi-seed-rfa

An application that is responsive to CZI's RFA.

Language: CSS - Size: 18 MB - Last synced at: 10 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 2