Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: ehr-phenotyping
CNAG-Biomedical-Informatics/convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
Language: Perl - Size: 79.9 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 9 - Forks: 1
zimolzak/healthcare-data-quality
Lecture slides on Electronic Health Record Data Quality
Language: Makefile - Size: 1.31 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 0 - Forks: 0
phenopackets/phenopacket-schema
Repository for the GA4GH phenopacket schema
Language: Java - Size: 1.44 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 68 - Forks: 27
eurekaclinical/eureka
RETIRED - Clinical phenotyping and ETL system
Language: Java - Size: 89.7 MB - Last synced: 2 months ago - Pushed: about 6 years ago - Stars: 2 - Forks: 11
ritaranx/CACHE
[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.
Language: Python - Size: 391 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 16 - Forks: 3
NHLI-Respiratory-Epi/SNOMED-CT-codelists
How to: create SNOMED CT codelists
Language: Stata - Size: 976 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 4 - Forks: 0
centre-for-health-informatics/Django-OMOP 📦
The OMOP Common Data Model(v6) implemented in Django (v3)
Language: Python - Size: 4.68 MB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 6 - Forks: 3
aafshar/TASTE
Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"
Language: MATLAB - Size: 796 KB - Last synced: 8 months ago - Pushed: about 4 years ago - Stars: 7 - Forks: 7
levrex/EHR-Clustering-RA
Cast different EHR (electronic health record) layers to a shared latent space to identify patient subtypes
Language: Jupyter Notebook - Size: 19.7 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 1
NHLI-Respiratory-Epi/drug-codelist-creation
How to: create drug codelists for recorded prescriptions
Language: Stata - Size: 31.6 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
NHLI-Respiratory-Epi/AECOPD
How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records
Language: Stata - Size: 120 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0
CogStack/nlp2phenome 📦
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
Language: Python - Size: 696 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 9 - Forks: 2
zhaojuanwendy/Topic_modeling_EHR
This project shows a method with a topic modeling approach: non-negative matrix factorization (NMF), used in EHR for subphenotyping and identifying the relationship between phenotypes and genetic variants
Language: Jupyter Notebook - Size: 19.4 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0
