medkit-lib/medkit

Toolkit for a learning health system

Language: Python - Size: 4.04 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 13 - Forks: 5

VectorInstitute/EHRMamba

A project webpage for the EHRMamba paper.

Language: JavaScript - Size: 12.1 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

HicServices/SynthEHR

Library and CLI for randomly generating medical data like you might get out of an Electronic Health Records (EHR) system

Language: C# - Size: 5.65 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 27 - Forks: 3

Ting-DS/AI-for-Healthcare-Data

Clinical Analysis and Modeling for EHR data, 2D and 3D medical imaging data, applying Pydicom, Pytorch, Keras-tensorflow, with medical and healthcare regulations and standards, for FDA submission

Language: Jupyter Notebook - Size: 71.3 MB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 1 - Forks: 0

Dare-marvel/Aarogya-Coin-Electronic-Health-Records-Blockchain-Mini-Project

🔐📊 Aarogya Coin: Reinventing Healthcare Records 🚀 Experience the future of Electronic Health Records (EHR) with SecureEHR. Utilizing blockchain for security and granular access control, while addressing scalability challenges, SecureEHR ensures a seamless and secure healthcare data management experience. 💪🏥

Language: JavaScript - Size: 7.36 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 0 - Forks: 0

som-shahlab/femr

FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

Language: Python - Size: 41.4 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 81 - Forks: 11

CogStack/MedCATtutorials

General tutorials for the setup and use of MedCAT.

Language: HTML - Size: 3.51 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 22 - Forks: 14

hms-dbmi/EHRtemporalVariability

R package for delineating temporal dataset shifts in Eletronic Health Records

Language: HTML - Size: 11.7 MB - Last synced: 8 days ago - Pushed: about 1 month ago - Stars: 14 - Forks: 8

JuliaHealth/juliahealth.github.io

Website for the JuliaHealth organization (powered by Franklin.jl).

Language: Julia - Size: 2.16 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 14 - Forks: 8

soumik-saha/PulseConnect

PulseConnect: Simplifying Blood Donation. Connects donors, recipients, and blood banks seamlessly. Register, request, or organize donation camps effortlessly. Secure authentication ensures trust. Join us in saving lives.

Language: JavaScript - Size: 2.54 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

CogStack/CogStack-NiFi

Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

Language: Python - Size: 74.9 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 31 - Forks: 16

CogStack/MedCAT

Medical Concept Annotation Tool

Language: Python - Size: 12.9 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 405 - Forks: 97

nyukat/COVID-19_prognosis

An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department

Language: Jupyter Notebook - Size: 97.5 MB - Last synced: 22 days ago - Pushed: about 3 years ago - Stars: 41 - Forks: 20

premchand9985/Predicting_Incident_HeartFailure_Disease_Based-on-Transformers

This repository hosts a cutting-edge deep learning model developed to predict 6-month incident heart failure utilizing electronic health records (EHRs). Heart failure is a multifaceted medical condition characterized by its significant impact on patients' well-being and healthcare systems.

Language: Python - Size: 302 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

spiros/phemap

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

Language: Python - Size: 132 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 25 - Forks: 3

BarnesLab/Patient2Vec

Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record

Language: Python - Size: 541 KB - Last synced: 3 months ago - Pushed: over 5 years ago - Stars: 100 - Forks: 29

abhishekverma276/SecuEHR

A Secure Application for Electronic Health Records

Language: JavaScript - Size: 7.65 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

st3v3nmw/elixir-backend

Backend for a distributed electronic health records system

Language: Python - Size: 5.28 MB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 1

yeong-hwan/iTrust2-yonsei

EHR(Electronics Health Records system) project to learn Software Engineering at Yonsei University

Language: Java - Size: 8.18 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

st3v3nmw/elixir-frontend

Frontend for a distributed electronic health records system

Language: Svelte - Size: 1.72 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 3

philipdarke/ukbb-ehr-data

Prepare UK Biobank Electronic Health Record data for research

Language: R - Size: 252 KB - Last synced: 3 months ago - Pushed: almost 2 years ago - Stars: 18 - Forks: 4

anondo1969/FedSemiCovidDetector

Repository for the journal article, 'Federated Semi-Supervised Multi-Task Learning to Detect COVID-19 and Lungs Segmentation Marking Using Chest Radiography Images and Raspberry Pi Devices: An Internet of Medical Things Application', Mahbub Ul Alam, Rahim Rahmani. Sensors 21, no. 15: 5025, https://doi.org/10.3390/s21155025.

Language: Python - Size: 4.24 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

NHLI-Respiratory-Epi/SNOMED-CT-codelists

How to: create SNOMED CT codelists

Language: Stata - Size: 976 KB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 4 - Forks: 0

sparkfish/scanray

Scanner event monitor for web-based scanning of PDF417 barcodes in healthcare setting

Language: TypeScript - Size: 5.19 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 12 - Forks: 0

Netherlands-Cancer-Institute/RadioLOGIC_NLP

RadioLOGIC: A general model for processing unstructured reports and making decisions in healthcare

Language: Python - Size: 35.3 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 3 - Forks: 1

tong-wu-umn/ME2Vec

Source code of ME2Vec.

Language: Python - Size: 44.9 KB - Last synced: 8 months ago - Pushed: 12 months ago - Stars: 13 - Forks: 3

cltl/a-proof-zonmw

Detecting the functioning level of a patient from a free-text clinical note in Dutch.

Language: Jupyter Notebook - Size: 31.8 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 5 - Forks: 3

thmccoy/CQH-Dimensional-Phenotyper

Language: Python - Size: 37.1 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 5 - Forks: 3

MLD3/JCO_CCI_aGVHD_prediction

Predicting Acute Graft-versus-Host Disease Using Machine Learning and Longitudinal Vital Sign Data from Electronic Health Records (Tang et al.), JCO Clinical Cancer Informatics 2020. https://doi.org/10.1200/CCI.19.00105

Language: Jupyter Notebook - Size: 4.11 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 0

MLD3/FIDDLE

FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms. https://doi.org/10.1093/jamia/ocaa139

Language: Jupyter Notebook - Size: 6.68 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 72 - Forks: 14

NYUMedML/GNN_for_EHR

Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"

Language: Python - Size: 555 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 223 - Forks: 57

healthylaife/MIMIC-IV-Data-Pipeline

A customizable pipeline for data extraction from MIMIC-IV.

Language: Jupyter Notebook - Size: 225 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 90 - Forks: 29

LuChang-CS/MTGAN

Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN

Language: Python - Size: 671 KB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 16 - Forks: 7

nedap/mdpi2021-textgen

Source code for the paper "Generating Synthetic Training Data for Supervised De-Identification of Electronic Health Records" in Future Internet (2021).

Language: Python - Size: 112 KB - Last synced: about 2 months ago - Pushed: about 3 years ago - Stars: 4 - Forks: 0

julianmatthewman/codelisttools

Shiny app for making clinical codelists

Language: R - Size: 63.5 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

NHLI-Respiratory-Epi/drug-codelist-creation

How to: create drug codelists for recorded prescriptions

Language: Stata - Size: 31.6 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

NHLI-Respiratory-Epi/AECOPD

How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records

Language: Stata - Size: 120 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

MyLikita-Health/sudoEMR

An Open Source Hospital Management System

Language: JavaScript - Size: 27.6 MB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 38 - Forks: 39

yangnianzu0515/MoleRec

The official implementation of our paper "MoleRec: Combinatorial Drug Recommendation with Substructure-Aware Molecular Representation Learning" (TheWebConf 2023).

Language: Python - Size: 4.94 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 23 - Forks: 0

anondo1969/FedSepsis

Repository for the article, 'FedSepsis: A Federated Multi-Modal Deep Learning-Based Internet of Medical Things Application for Early Detection of Sepsis from Electronic Health Records Using Raspberry Pi and Jetson Nano Devices', Mahbub Ul Alam, Rahim Rahmani. Sensors 23, no. 2: 970, https://doi.org/10.3390/s23020970.

Language: Jupyter Notebook - Size: 265 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1

Nikunj-Gupta/Low-rank-models-EHR

Approximated missing values in noisy, heterogeneous electronic health records by low rank modeling.

Language: Jupyter Notebook - Size: 84 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

cosmasnyairo/Blockchain-EHR

Four Year Project: Electronic Health Records using Blockchain

Language: Dart - Size: 22.5 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 14 - Forks: 10

sylvaincom/medgan-tips

[Python] Additional works on Edward Choi's medGAN (generative adversarial network for electronic health records). In particular: boosting the prediction score using dataset augmentation.

Language: Jupyter Notebook - Size: 374 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 14 - Forks: 2

levrex/DiagnosisExtraction_ML

Pipeline for building Machine Learning Classifiers for the diagnosis of EHR text-data. We used this pipeline for our study, published here: https://doi.org/10.2196/23930.

Language: Jupyter Notebook - Size: 31.3 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 9 - Forks: 3

nlp-pucrs/cci-regression

Charlson Comorbidity Index Regression using Clinical Notes

Language: Jupyter Notebook - Size: 1.17 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 9 - Forks: 2

philipdarke/ehr-codesets

Code sets for Electronic Health Record research

Size: 63.5 KB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1

abhilampard/Hospital-Readmission-Prediction-XGBoost

Prediction of a readmission for a patient based on the Electronic Health Records (EHR) data. This project was done as part of a timed challenge with a time limit of 3 hours to work on this dataset. So, it is just a preliminary model using XGBoost algorithm with some basic data exploration for data processing.

Language: R - Size: 4.45 MB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

marksendak/constellation

Time series joins to identify sequence of related events

Language: R - Size: 561 KB - Last synced: 22 days ago - Pushed: over 5 years ago - Stars: 5 - Forks: 3

clementinojr/Bag-of-Attribute-Representation-BOAR-

Paper published in IEEE 33rd International Symposium on Computer Based Medical Systems (CBMS)

Language: Python - Size: 5.78 MB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

mcguinlu/CPRD-LRA

Code for an analysis of the association of lipid regulating agents (e.g. statins) with incidence of dementia outcomes

Language: Stata - Size: 11.7 MB - Last synced: over 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

boston-aim/medical-data

Open Medical Data

Language: SCSS - Size: 86.9 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

carsaesi/EHRsourceVariability

Measuring and visualizing biomedical data variability/heterogeneity across data sources

Language: R - Size: 183 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 3 - Forks: 0

pranath/patient_select_diabetes

In this project, we will create a deep learning model trained on EHR data (Electronic Health Records) to find suitable patients for testing a new diabetes drug.

Language: Python - Size: 3.94 MB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

chgibb/curly-parakeet

An experiment in creating a (mostly) formally verified, domain specific markup language for electronic patient records and patient modeling.

Language: TypeScript - Size: 1.3 MB - Last synced: over 1 year ago - Pushed: about 6 years ago - Stars: 2 - Forks: 0