Ecosyste.ms: Repos
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GitHub topics: genotype-phenotype-maps
harmslab/gpmap
A Python API for managing genotype-phenotype map data
Language: Python - Size: 1.42 MB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 11 - Forks: 8
harmslab/epistasis
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
Language: Python - Size: 4.62 MB - Last synced: 12 days ago - Pushed: 10 months ago - Stars: 32 - Forks: 11
devinkeane/sPyderMIM
Constructs and analyzes genotype/phenotype networks using a list of OMIM phenotypic MIM numbers as input; ranks and clusters disease associated gene sets; runs enrichment analysis on gene sets for mechanism and drug discovery.
Language: Python - Size: 37.8 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 0
harmslab/notebooks-nonlinear-high-order-epistasis
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
Language: Jupyter Notebook - Size: 3.47 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 6 - Forks: 11
divprasad/1DconvKernels
👨💻🧬🤖 deep neural networks: 1Dconvolution experiments with kernel size and stride length
Language: Jupyter Notebook - Size: 42.8 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
vatj/gpmap_integer_polyomino
Code repository for the analysis of the Genotype-Phenotype Map Properties of the Integer Polyomino Model.
Language: C++ - Size: 3.64 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
