GitHub topics: mitogenome
cmayer/MitoGeneExtractor
The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
Language: C++ - Size: 929 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 8 - Forks: 3
Kinggerm/GetOrganelle
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
Language: Python - Size: 114 MB - Last synced at: 30 days ago - Pushed at: 3 months ago - Stars: 321 - Forks: 54
sihellem/TERmitoGENOMES
Repository for mitogenome assembly and annotation in termites.
Size: 420 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
RemiAllio/MitoFinder
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
Language: Python - Size: 268 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 73 - Forks: 12
gavieira/mitofree 📦
Automated mitochondrial genome assembly using SRA public data
Language: Perl - Size: 25.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
WangSoybean/Chrysanthemum-nankingense-mitogenome
Size: 2.39 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
RhettRautsaw/MitoSIS
MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.
Language: Python - Size: 5.34 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 1
charlesfoster/mitowrap
A snakemake pipeline wrapping MitoZ and getOrganelle for de novo mitogenome assembly using short reads and subsequent QC.
Language: Python - Size: 10.7 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
hempelc/mitogenome_assembly_evaluation
A project to compare and evaluate different mitogenome assemblers
Language: Shell - Size: 882 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
