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GitHub topics: protein-secondary-structure

SPC-Facility-EMBL-Hamburg/circularDichroismApp

R shiny app to analyse circular dichroism data

Language: Python - Size: 16.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 1

yasirbarlas/protein-secondary-structure-prediction

Protein Secondary Structure Prediction (PSSP) using machine learning algorithms.

Language: Jupyter Notebook - Size: 5.64 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

thuxugang/opus_tass

OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks

Language: Python - Size: 110 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 11 - Forks: 2

peace195/multitask-learning-protein-prediction

Multitask learning: protein secondary structure prediction, b-values prediction and solvent-accessibility prediction

Language: Python - Size: 24 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 24 - Forks: 7

nickcafferry/PSSpred

PSSpred (Protein Secondary Structure prediction) is a simple neural network training algorithm for accurate protein secondary structure prediction. It first collects multiple sequence alignments using PSI-BLAST. Amino-acid frequence and log-odds data with Henikoff weights are then used to train secondary structure, separately, based on the Rumelhart error backpropagation method. The final secondary structure prediction result is a combination of 7 neural network predictors from different profile data and parameters. The program is freely downloadable at the bottom of this page.

Language: Perl - Size: 488 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 3

katarinaelez/protein-ss-pred

Protein secondary structure predictor

Language: Jupyter Notebook - Size: 18.5 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 1

jtang10/MUFold-ss-pytorch

MUFold-ss protein secondary structure prediction implementation in pytorch

Language: Python - Size: 19.5 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

thuxugang/opus_fold

OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling

Size: 9.26 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 19 - Forks: 3

gkoulouras/seq-sec-ratio

A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.

Language: Visual Basic - Size: 812 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 0

Related Keywords
protein-secondary-structure 9 protein-folding 2 protein-torsion-angles 2 secondary-structure-prediction 1 svm 1 cnn-model 1 inception 1 pytorch 1 opus-fold 1 protein-contact-map 1 protein-potential-functions 1 protein-scoring-functions 1 protein-side-chain-modeling 1 protein-strucutre-prediction 1 amino-acids 1 bioinformatics 1 bioinformatics-data 1 bioinformatics-databases 1 bioinformatics-scripts 1 pdb 1 pdb-files 1 protein-data-bank 1 protein-sequences 1 secondary-structure 1 ss-txt 1 vb-net 1 circular-dichroism 1 data-analysis 1 protein-stability 1 spectroscopy 1 protein-secondary-structure-prediction 1 pssp 1 opus-tass 1 bidirectional-lstm 1 deep-learning 1 lstm 1 multitask-learning 1 protein-b-values 1 protein-deep-learning-algorithm 1 protein-solvent-accessibility 1 protvec 1 tensorflow 1 acid-frequence 1 henikoff-weights 1 nerual-network 1 prediction-algorithm 1 protein 1 psi-blast 1 gor 1