GitHub topics: repeatmasker
andrewgull/MGERT
Mobile Genetic Elements Retrieving Tool
Language: Python - Size: 1.99 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 15 - Forks: 5
bioinfo-ut/AluMine
Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes
Language: Perl - Size: 932 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 1
clemgoub/dnaPipeTE
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
Language: Dockerfile - Size: 381 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 41 - Forks: 10
darcyabjones/pante
A pipeline for predicting and masking transposable elements in multiple genomes.
Language: Groovy - Size: 4.53 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 9
LKremer/TEcov
A pipeline to to determine the repeat content of genes and their neighboring regions.
Language: Python - Size: 6.84 KB - Last synced at: 4 months ago - Pushed at: over 8 years ago - Stars: 7 - Forks: 1
