leipzig/awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

Language: Python - Size: 1.22 MB - Last synced: about 6 hours ago - Pushed: 2 days ago - Stars: 297 - Forks: 34

guilgautier/reproducible-phd

Get your Ph.D. reproducible with Python and Github

Language: TeX - Size: 10.7 KB - Last synced: 10 days ago - Pushed: over 4 years ago - Stars: 4 - Forks: 0

reanahub/reana

REANA: Reusable research data analysis platform

Language: Python - Size: 2.82 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 121 - Forks: 50

centre-for-humanities-computing/DaCy

DaCy: The State of the Art Danish NLP pipeline using SpaCy

Language: Python - Size: 22.3 MB - Last synced: 4 days ago - Pushed: 4 months ago - Stars: 89 - Forks: 20

gpoore/codebraid

Live code in Pandoc Markdown

Language: Python - Size: 749 KB - Last synced: 21 days ago - Pushed: 7 months ago - Stars: 362 - Forks: 13

mxagar/udacity-cd0581-building-a-reproducible-model-workflow-exercises Fork of udacity/cd0581-building-a-reproducible-model-workflow-exercises

Exercise Staters and solutions for cd0581-building-a-reproducible-model-workflow by Giacomo Vianello

Language: Jupyter Notebook - Size: 7.1 MB - Last synced: 29 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

tdayris/fair_gatk_mutect2

Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

Language: Python - Size: 72.3 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

ctuning/ctuning-programs

Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:

Language: C - Size: 10.9 MB - Last synced: 22 days ago - Pushed: over 2 years ago - Stars: 49 - Forks: 11

calekochenour/machine-learning-tutorial

Tutorial for working with machine learning algorithms in Python.

Language: Python - Size: 31.3 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

ziap/dotfiles

My SwayWM dotfiles

Language: Lua - Size: 57.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 31 - Forks: 0

calekochenour/remote-sensing-textbook

Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.

Language: HTML - Size: 2.14 MB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 37 - Forks: 12

holmesjoli/archiveR

An R package for data archiving and linking with code

Language: R - Size: 205 KB - Last synced: 3 months ago - Pushed: about 5 years ago - Stars: 2 - Forks: 0

gederajeg/happyr

The accompanying R package for Rajeg's (2019) PhD thesis titled "Metaphorical profiles and near-synonyms: A corpus-based study of Indonesian words for Happiness"

Language: R - Size: 3.16 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

tdayris-perso/bam-msisensor 📦

Detect replication slippage variants at microsatellite regions

Language: Python - Size: 43.2 MB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

enoches/Qualis_2019_preliminar

Revistas de Economia com a nova classificação Qualis 2019: lista extraída a partir daquele PDF de quatrocentas páginas!

Language: HTML - Size: 4.83 MB - Last synced: 9 months ago - Pushed: about 2 years ago - Stars: 5 - Forks: 3

pbizopoulos/a-makefile-for-developing-containerized-latex-technical-documents

Language: TeX - Size: 77.1 KB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 0

a-paxton/living-documents

How to use Jupyter notebooks and R markdown to create living documents and reproducible reports.

Language: Jupyter Notebook - Size: 3.3 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 49 - Forks: 1

tdayris-perso/rna-count-salmon 📦

Snakemake workflow for Salmon quantification and FastQC quality controls

Language: Python - Size: 396 KB - Last synced: 5 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

holmesjoli/utilsPy 📦

Python utility functions

Language: Python - Size: 29.3 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

gisma-courses/LV-uav-workflow

The Micro Remote Sensing course - provides a complete introduction to reproducible flight planning, acquisition, pre-processing, and exemplar analysis of high resolution low budget image data using commercial and open software systems.

Language: Ruby - Size: 87.9 MB - Last synced: 4 months ago - Pushed: 11 months ago - Stars: 2 - Forks: 0

smarthome-go/server-integration-docker

A docker image for running the server's integration tests in a reproducible manner

Language: Shell - Size: 14.6 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

gustaveroussy/rna-count-kallisto

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

Language: Python - Size: 1.1 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 3 - Forks: 3

OpenScienceMOOC/Module-3-Reproducible-Research-and-Data-Analysis

Module 3: Reproducible Research and Data Analysis

Language: HTML - Size: 12.5 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 9 - Forks: 9

holmesjoli/utilsR

R utility functions

Language: R - Size: 186 KB - Last synced: 3 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

ivotron/mlperf-workflows

Popperized MLPerf benchmark workflows

Language: Python - Size: 2.26 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

gustaveroussy/rna-count-salmon

Count your fastq-formatted rna-seq reads with Salmon

Language: Python - Size: 335 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1

holmesjoli/ProgrammerKnowledgeBase

A bookdown project of best programmer practices for intermediate R and Python programmers

Language: HTML - Size: 3.11 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

holmesjoli/archivePy

A Python package for data archiving and linking with code

Language: Python - Size: 48.8 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

adaish/reprod

my R environment

Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0