bibymaths/nf-illumina2lineage

Modular Nextflow pipeline for SARS-CoV-2 genome assembly and analysis from Illumina reads—includes QC, mapping, variant calling, consensus generation, lineage annotation, and phylogenetics.

Language: Shell - Size: 9.02 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0

AMRmicrobiology/WGS-Analysis-VariantCalling

Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.

Language: Nextflow - Size: 837 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 2 - Forks: 0

biowdl/germline-DNA

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

Language: wdl - Size: 8.93 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 22 - Forks: 7

jppmatos/vcall

variantcalling

Language: Dockerfile - Size: 25.4 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 2

biowdl/somatic-variantcalling

A pipeline for somatic variantcalling. Category:Single-Sample

Language: wdl - Size: 3.14 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 1

amelgh/DNASeq-VariantCalling

Language: Shell - Size: 785 KB - Last synced at: 3 months ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 3