GitHub topics: virulence
garcia-nacho/TOP
Bacterial swiss-army-knife pipeline for NGS data
Language: Python - Size: 143 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1
ssi-dk/ecoli_fbi
Determines the serotype and virulence in Escherichia coli isolates using NGS data (reads) through kmer alignment.
Language: Python - Size: 103 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
folkehelseinstituttet/DiscoveryDocker Fork of garcia-nacho/DiscoveryDocker
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
Language: Python - Size: 77.7 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
aleimba/ecoli_VF_collection
Collection of 1069 Escherichia coli virulence factors
Size: 270 KB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 2 - Forks: 1
abdouf/parasite-induced-shifts
The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.
Language: MATLAB - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
garcia-nacho/DiscoveryDocker Fork of lucadesabato/Discover1.1
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
Language: Python - Size: 77.7 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
chris-rands/annotated_profile_HMMs
Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
Size: 7.51 MB - Last synced at: 6 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0
