Topic: "bio-formats"
ome/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
Language: Java - Size: 267 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 394 - Forks: 250
DIPlib/diplib
Quantitative Image Analysis in C++, MATLAB and Python
Language: C++ - Size: 30 MB - Last synced at: 21 days ago - Pushed at: about 2 months ago - Stars: 240 - Forks: 54
AllenCellModeling/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Language: Python - Size: 173 MB - Last synced at: 10 days ago - Pushed at: 4 months ago - Stars: 213 - Forks: 50
aoles/RBioFormats
:books: R interface to the Bio-Formats library
Language: R - Size: 118 MB - Last synced at: 25 days ago - Pushed at: about 1 year ago - Stars: 25 - Forks: 14
WolframResearch/BioFormatsLink
Package for interacting with Bio-Formats library in the Wolfram Language
Language: Mathematica - Size: 66.6 MB - Last synced at: 25 days ago - Pushed at: over 2 years ago - Stars: 15 - Forks: 8
ome/bio-formats-examples
Examples of usage of the Bio-Formats API
Language: Java - Size: 388 KB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 13 - Forks: 19
BiologyTools/BioGTK
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Language: C# - Size: 146 MB - Last synced at: about 19 hours ago - Pushed at: 3 months ago - Stars: 13 - Forks: 2
darwinjob/pyramidio-bioformats Fork of usnistgov/pyramidio
Image pyramid reader and writer enhanced with bio-formats library reader
Language: Java - Size: 24.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 5
ome/bio-formats-documentation
Bio-Formats documentation
Language: Java - Size: 9.48 MB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 18
BiologyTools/Bio
A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Language: C# - Size: 28.9 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0
BiologyTools/BioCore
Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Language: C# - Size: 107 MB - Last synced at: 3 days ago - Pushed at: 5 months ago - Stars: 4 - Forks: 1
himsr-lab/CU-CellSeg
Cell segmentation of multi-channel images
Language: ImageJ Macro - Size: 201 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 0
spacetx/spacetx-writer
Convert supported filesets to the SpaceTx format
Language: Java - Size: 85.9 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 1
tusharrp/card
This is a webpage where gamers All information is designed in one card with animation.
Language: CSS - Size: 12.7 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
ome/ecdp2019-publication
Supplementary information associated with Besson et al. (2019) ECDP 2019
Language: Python - Size: 6.43 MB - Last synced at: 5 days ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 3
ome/bio-formats-jace 📦
Bio-Formats JACE C++ bindings
Language: C++ - Size: 35.2 KB - Last synced at: 5 days ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 4
ome/bio-formats-octave-docker
Bio-Formats Octave container based on openmicroscopy/octave
Language: MATLAB - Size: 71.3 KB - Last synced at: 5 days ago - Pushed at: 6 months ago - Stars: 1 - Forks: 8
himsr-lab/CU-IScore
IHC scoring of multi-channel images
Language: ImageJ Macro - Size: 43.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
ome/bio-formats-build
Bio-Formats top-level build for all components
Language: Shell - Size: 871 KB - Last synced at: 5 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 10
RoomOfAnalysis/bioimread
read kinds of bio image formats
Language: C++ - Size: 40.2 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 0
ome/bio-formats-fiji
A simple POM to update Bio-Formats on a Fiji distribution
Language: Shell - Size: 93.8 KB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 7
tdiprima/medical-image-processing
A Java Maven project demonstrating medical image processing techniques with Tesseract OCR, DCM4CHE DICOM tools, and Bio-Formats.
Language: Java - Size: 34.2 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
sbesson/bio-formats-octave-docker Fork of ome/bio-formats-octave-docker
Bio-Formats Octave container based on openmicroscopy/octave
Language: MATLAB - Size: 45.9 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
microscopepony/bio-formats-bundles 📦
**Experimental** Distribution bundles for bio-formats releases
Language: Shell - Size: 41 KB - Last synced at: 11 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 4
microscopepony/bio-formats-imagej 📦
**Experimental** Bio-Formats ImageJ plugin for image import and export
Language: Java - Size: 1.71 MB - Last synced at: 11 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 3
microscopepony/bio-formats-test 📦
**Experimental** Bio-Formats integration tests
Language: Java - Size: 1.14 MB - Last synced at: 11 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 3
ome/ome-files-performance 📦
A repository for benchmark testing of OME Files
Language: Java - Size: 1.53 MB - Last synced at: 5 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 7
ome/ome-release 📦
Scripts for OME releases (deprecated)
Language: HTML - Size: 3.1 MB - Last synced at: 5 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 11
sbesson/bio-formats-fiji Fork of ome/bio-formats-fiji
A simple POM to update Bio-Formats on a Fiji distribution
Language: Shell - Size: 51.8 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
labsyspharm/bftools-docker
BioFormats Tools Docker Image
Size: 1.95 KB - Last synced at: 4 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
