Topic: "bioengineering"
modenaxe/awesome-biomechanics
A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.
Size: 689 KB - Last synced at: 13 days ago - Pushed at: about 2 months ago - Stars: 839 - Forks: 138
bebop/poly
A Go package for engineering organisms.
Language: Go - Size: 11 MB - Last synced at: 2 days ago - Pushed at: 7 months ago - Stars: 701 - Forks: 72
20n/act
Computational synthetic biology: Predicting DNA edits for bioengineering
Language: Java - Size: 9.6 MB - Last synced at: 7 days ago - Pushed at: about 8 years ago - Stars: 86 - Forks: 25
modenaxe/3d-muscles
Materials to reproduce the results of our paper about 3D muscle modelling.
Language: MATLAB - Size: 33.3 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 31 - Forks: 5
barricklab/ostir
Software for predicting translation initiation rates in bacteria
Language: Python - Size: 6.84 MB - Last synced at: about 24 hours ago - Pushed at: 6 months ago - Stars: 22 - Forks: 9
modenaxe/MuscleParamOptimizer
Scripts and models to optimize musculotendon parameters in musculoskeletal models.
Language: MATLAB - Size: 5.97 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 20 - Forks: 8
reubn/ecg
Portable WiFi Connected IoT ECG Monitor 📈💕
Language: JavaScript - Size: 2.41 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 20 - Forks: 4
jvrana/Terrarium
Computer-Aided Process Planner (CAPP) for Synthetic Biology Research
Language: Jupyter Notebook - Size: 33.6 MB - Last synced at: 2 days ago - Pushed at: almost 4 years ago - Stars: 11 - Forks: 1
meyer-lab/tHMM
A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
Language: Python - Size: 63.3 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 1
ThecoderPinar/nanoDNA-nanoROBOT-simulation
nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖
Language: Python - Size: 510 KB - Last synced at: 25 days ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 2
Bjarten/flc-based-filters
Language: Jupyter Notebook - Size: 4.08 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 1
NydusOne/gcode-composer
CARE! PROTOTYPE! The gcode composer is a tool to plan experiments with the nydus one open source bioprinter.
Language: JavaScript - Size: 515 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 0
AndrewAGuy/vascular-networks
Procedural Plumbing for Bioengineers
Language: C# - Size: 702 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 3 - Forks: 2
plasmid-designer/plasmid-designer
Plasmid Designer and DNA Editor
Language: TypeScript - Size: 2.8 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 3 - Forks: 1
medicamina/ui
Medicamina user interface
Language: Dart - Size: 28.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0
Shaumik-Ashraf/BiosystemsProject
A command-line interface and biochemical pathway finder based on KEGG
Language: Python - Size: 1.65 MB - Last synced at: about 2 months ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 1
AnanyaP-WDW/PepEmb
A transformer-based masked language model for learning amino acid sequence representations. The model uses self-attention mechanisms with custom gating and incorporates protein features for enhanced sequence understanding. Trained using BERT-style masking on peptide sequences to learn contextual amino acid embeddings.
Language: Python - Size: 47.9 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 1
Blackfynn/blackfynn-matlab
MATLAB toolbox/client for the Blackfynn platform
Language: MATLAB - Size: 13.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
J-E-J-S/aaRS-pipeline
A Scalable Pipeline for Discovery of aaRS Mutants to Aid in Genetic Code Expansion.
Language: Python - Size: 138 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 1
MadjdaKhedi/parkinson_voice_analyzer
Interactive Streamlit app for detecting Parkinson’s Disease from voice recordings using a transparent stacked‑ensemble model, featuring per‑patient analysis, radar/bar charts, and feature‑importance insights.
Language: Python - Size: 10.5 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0
medicamina/medicamina.github.io
Documentation
Language: SCSS - Size: 4.71 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
Intergalactic-Mesh-Coalition-IMC/exo-botany-research
Repository for studying extraterrestrial plant life and ecosystems, exploring the potential for agriculture, bioengineering, and terraforming on celestial bodies across the cosmos.
Language: Python - Size: 57.6 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0
mattychin/3D-cell-scaffold-generator
Grasshopper algorithm for FRC-inspired scaffold generation.
Size: 9.47 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
SamuelLozanoJuarez/CNN_and_Diabetic_Retinopathy
Repository corresponding to the TFG 'Detection of the degree of diabetic retinopathy by means of convolutional networks' of the bachelor's degree in Bioengineering of the University of Burgos.
Language: Python - Size: 8.34 GB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
santiagortiiz/Bioengineering-Firmware-29-Datalogger-I2C-Protocol
University of Antioquia. Embedded Systems. Datalogger using I2C protocol with RTC MCP7940 & T[°C] Sensor LM75BD
Language: C - Size: 33.2 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
Rice-University-BMES/Python-Workshops
Introductory Python Workshops! Check out README for more info!
Language: Python - Size: 177 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
ACRRL/Lab-Description
Applied Control & Robotics Research Laboratory
Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1
LASER-UD/Pulsomertria-con-MAX30102
En este proyecto se realizara la medición de el porcentaje de saturación de oxígeno de la hemoglobina con el uso del sensor MAX30102, el cual usa el protocolo I2C para su respectiva comunicación, la pila de comunicación se pondra en una libreria, la cual esta inspirada en https://github.com/sparkfun/SparkFun_MAX3010x_Sensor_Library. La lectura del sensor se enviara a un modulo Bluetooth para que se grafique la señal en a un celular con la aplicación Bluetooth Electronic. .
Language: C - Size: 6.63 MB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0
vedangnarain/polygraph-project
This is a computational framework to analyze raw biological data generated from a polygraph test for the purpose of making psychophysiological inferences.
Language: Python - Size: 1.34 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
imwiththou/PathwayNet
PathwayNet is a project based on Python and Bioinformatics. It tries to build up mathematic modes on simulating pathways of amino acid synthesis in E. coli.
Language: Python - Size: 201 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
phuongho43/beng125-trpOperon 📦
Modeling tryptophan operon dynamics based on Xiu 1997 paper
Language: Jupyter Notebook - Size: 11.3 MB - Last synced at: 7 months ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
orionanseaweed/HUST-BF4725
Visualizations from HUST-BF4725 class.
Language: R - Size: 43.9 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
15-minute-discourse/bioengineered-organs
Associated repository for the "Biofabrication Revolution: Are Lab-Grown Organs the Future of Medicine?" 15 minute discourse podcast on YouTube!
Size: 206 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
aarmey/167L-materials
Materials for bioengineering 167L
Language: HTML - Size: 2.25 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 3
Necas209/Bioengineering-Workshops
Source code for the Bioengineering workshops.
Language: C - Size: 30.3 KB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
davepruitt/RePlay
RePlay: motor rehab app by the Texas Biomedical Device Center
Language: C# - Size: 72.5 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
Lmmk416/lmmk416.github.io
Lauren Mclaughlin-Kelly's Website
Size: 37.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
sabouri1994/Bedsore_Project
Anti Bedsore bed
Size: 64.3 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
LENeR-UEL/Proj_01_EEG-FES-MMG-FORCE
Documentation to EEG-FES interface, closed-loop control with Force and MMG sensors
Language: Lua - Size: 566 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
sunnyosun/N2-paper-analysis
Analysis of yeast fusion chromosomes paper - Luo18
Language: R - Size: 3.97 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
brandon-holt/enzyme-simulation
An interactive enzyme substrate simulation for LSI at Georgia Tech
Language: C# - Size: 37 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-28-SPI-Protocol-with-IMU-MPU9265
University of Antioquia. Embedded Systems. SPI communication protocol with an IMU (Innertial Movement Unit)
Language: C - Size: 437 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-27-Memory-Explorer
University of Antioquia. Embedded Systems. Regions: Code, Flash, SRAM, Peripherals, external RAM, external device, system
Language: C - Size: 276 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
santiagortiiz/Bioengineering-Firmware-26-Sensing-System-Adjustable-Alarms
University of Antioquia. Embedded Systems. Sensing system with adjustable alarms
Language: C - Size: 633 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-25-Divide-Conquer-Guide
University of Antioquia. Embedded Systems. Example of Divide and Conquer for C Microcontroller projects.
Language: C - Size: 25.4 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-24-Real-Reference-Voltage
University of Antioquia. Sensors. Meassurement of the real reference voltage for a PSoC
Language: C - Size: 23.4 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-23-Pressure-Monitoring
University of Antioquia. Sensors. Medical gas monitoring system
Language: C - Size: 38.1 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-22-OneWire-Protocol-RH-Temperature
University of Antioquia. Sensors. Humidity and temperature measurement using sensors with one wire protocol
Language: C - Size: 166 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-21-Ultrasound
University of Antioquia. Sensors. Distance meassurement with an Ultrasound sensor
Language: C - Size: 31.3 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-20-Strain-Gauge
University of Antioquia. Sensors. Digital scale using strain gauges
Language: C - Size: 377 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-19-Heart-Rate-Meassurement
University of Antioquia. Sensors. Heart rate meassurement with pulse oximeter
Language: C - Size: 71.3 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-18-Accelerometer
University of Antioquia. Sensors. Angle meassurement with an accelerometer
Language: C - Size: 1.11 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-17-ECG-Chip-AD8232
University of Antioquia. Sensors. ECG meassurement with the micro chip AD8232
Language: Python - Size: 490 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-16-Photoswitches
University of Antioquia. Sensors. Photoswitches
Language: C - Size: 26.4 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-15-ADC-Resolution
University of Antioquia. Sensors. ADC resolution
Language: C - Size: 30.3 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-14-Input-Capture
University of Antioquia. Digital Electronics. Input Capture
Language: C - Size: 22.5 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-13-Serial-Communication
University of Antioquia. Digital Electronics. Serial Communication
Language: C - Size: 48.8 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-12-PWM-Control
University of Antioquia. Digital Electronics. PWM control
Language: C - Size: 51.8 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-11-Matrix-Keyboard
University of Antioquia. Digital Electronics. Keyboard controlled system
Language: C - Size: 47.9 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-10-Restricted-Access-System
University of Antioquia. Digital Electronics. Restricted access system
Language: C - Size: 35.2 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-9-Configurable-Timer
University of Antioquia. Digital Electronics. Configurable timer
Language: C - Size: 29.3 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-8-Password-Validation
University of Antioquia. Digital Electronics. Restricted access system
Language: C - Size: 27.3 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-7-Sequence-Detector
University of Antioquia. Digital Electronics. Sequence detector
Language: C - Size: 30.3 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-6-Radiosurgery-Robot
University of Antioquia. Digital Electronics. Radiosurgery Robot
Language: C - Size: 37.1 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-4-ADC
University of Antioquia. Digital Electronics. Sequential circuits using flip flops
Language: C - Size: 25.4 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-3-Flip-Flops
University of Antioquia. Digital Electronics. Sequential circuits using flip flops
Language: C - Size: 76.2 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-2-Piano
University of Antioquia. Digital Electronics. Piano
Language: C - Size: 27.3 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
santiagortiiz/Bioengineering-Firmware-1-Digital-Clock
University of Antioquia. Digital Electronics. Digital Clock
Language: C - Size: 25.4 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
meyer-lab/common
Common elements for projects across the lab.
Language: HTML - Size: 87.9 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
davepruitt/replay_usability_study_analysis_code
Analysis code for the RePlay usability study
Language: Python - Size: 79.1 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
vedangnarain/cancer-immunoediting
This project aims to model the disruptive effects of cytotoxic chemotherapeutic drugs on the immunoediting process.
Language: Python - Size: 2.75 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
alextzik/bioengineering-2018
A group project that was part of the Bioengineering course in the Department of Electrical & Computer Engineering at the Aristotle University of Thessaloniki.
Language: MATLAB - Size: 182 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0
lirandepira/ecg-ppg-comp
A comparison of measuring ECG and PPG parameters: A test case for using the Smartphone and the Bitalino Board Kit
Language: Matlab - Size: 145 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
davepruitt/JawBooth
This project is designed to assess cortical motor map changes due to pellet eating behavior paired with vagus nerve stimulation
Language: C# - Size: 4.71 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0