Topic: "boolean-networks"
jcrozum/pystablemotifs
Python library for attractor identification and control in Boolean networks
Language: Jupyter Notebook - Size: 3.25 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 29 - Forks: 9
bnediction/bonesis
Synthesis and Reprogramming of Most Permissive Boolean Networks
Language: Python - Size: 641 KB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 13 - Forks: 2
bnediction/scBoolSeq
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
Language: Python - Size: 266 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 1
boolsi/boolsi
Distributed simulations and analysis of synchronous Boolean networks
Language: Python - Size: 630 KB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 8 - Forks: 4
zpp20/bang
BANG is a Python package dedicated to analysis, simulation, and control of Boolean networks with the help of CUDA.
Language: Python - Size: 56.8 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 0
arnaudporet/kali
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
Language: Go - Size: 982 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0
jcrozum/biobalm
The biologist's Boolean attractor landscape mapper, building Waddington landscapes from Boolean networks.
Language: Python - Size: 69.2 MB - Last synced at: 28 days ago - Pushed at: 29 days ago - Stars: 3 - Forks: 1
pauleve/updating-modes-notebooks
Notebooks demonstrating colomoto.minibn for computing dynamics of Boolean networks with various update modes
Language: Jupyter Notebook - Size: 181 KB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
bnediction/bonesistools
BoNesisTools is a python package proposing bioinformatics tools for upstream and downstream analysis of BoNesis framework
Language: Python - Size: 8.85 MB - Last synced at: 6 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
mathieubolteau/scRNA2BoNI
scRNA2BoNI - A general framwork to infer Boolean networks from scRNAseq data.
Language: Python - Size: 78.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
bnediction/reprogramming-with-bonesis
Executable paper and data demonstrating marker reprogramming of Boolean networks with BoNesis
Language: TeX - Size: 657 KB - Last synced at: 9 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
gmagannaDevelop/M2_Internship_Supplementary
Supplementary Materials to reproduce figures appearing on my M2 Internship Report
Language: Jupyter Notebook - Size: 5.22 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
arnaudporet/smoosim
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
Language: R - Size: 84 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 3