diploid | Topic | Ecosyste.ms: Repos

Topic: "diploid"

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Language: Python - Size: 136 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 232 - Forks: 80

C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.

Language: Python - Size: 70.3 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 36 - Forks: 3

Using de-novo assembly and read-phasing to assemble reference-free diploid genomes

Language: R - Size: 494 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 19 - Forks: 1

A KMER-based genome-wIde Assocation testing approach on polyploids

Language: C - Size: 16.4 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 8 - Forks: 0

LCVCFtools is a program designed for working with VCF files generated from low-coverage whole genome sequencing

Language: C++ - Size: 52.7 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

Language: Jupyter Notebook - Size: 22.8 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Files to generate input files and run diploidocus on Setonix

Language: Shell - Size: 101 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Evolution of a diploid population evolving under a form of viability selection and (optionally) sweepstakes reproduction

Language: CWeb - Size: 1.2 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Short Sequence Rastreator allows genetic diversity analysis and preparation of input files for other softwares such as STRUCTURE, DARwin and SPAGeDi.

Language: Python - Size: 25.4 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0