Topic: "genotype-imputation"
Zilong-Li/lcWGS-imputation-workflow
Imputation workflow for low coverage whole genome sequencing data
Language: Python - Size: 121 MB - Last synced at: 3 days ago - Pushed at: 5 months ago - Stars: 9 - Forks: 0
vinhdc10998/GRUD
This repository contains a Python implementation of GRUD model, which is a genotype imputation based on deep learning algorithms
Language: Python - Size: 1.2 GB - Last synced at: 11 months ago - Pushed at: 12 months ago - Stars: 6 - Forks: 0
srubinacci/imputation-ukb-ref-panel
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
Language: Shell - Size: 34.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0
esohkevin/ei-gwas
gwas workflow from raw intensity data to in-silico functional mapping
Language: Shell - Size: 709 KB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0
CERC-Genomic-Medicine/glimpse_pipeline
Pipeline for variant imputation in low depth sequencing data using GLIMPSE
Language: Nextflow - Size: 30.3 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 3 - Forks: 1
Zilong-Li/array-imputation-workflow
imputation workflow for array data using shapeit2 and impute2
Language: Python - Size: 43.9 KB - Last synced at: 3 days ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0
Zilong-Li/phaseless
Imputation and Admixture for lcWGS in one goal
Language: C++ - Size: 12.8 MB - Last synced at: 3 days ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
renatosantos98/GLIMPSE-low-coverage-WGS-imputation
Supporting data for "Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients"
Language: Python - Size: 28.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
quansun98/MagicalRsq
MagicalRsq: Machine-learning-based genotype imputation quality calibration
Language: R - Size: 111 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
marcusnizalvarez/LCVCFtools
LCVCFtools is a program designed for working with VCF files generated from low-coverage whole genome sequencing
Language: C++ - Size: 52.7 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
ldgh/Genotype-Imputation-public
Public description of LDGH Genotype Imputation v.2. pipeline developed in Phyton by Thiago Peixoto Leal, with the collaboration by Nathalia M. Araujo, Marilia Scliar and Ricardo Lyra. The user may choose to use SHAPEIT2 or SHAPEIT4 for haplotype inferences, and IMPUTE2 or IMPUTE4 for imputation. For further details or if you are interested in using it, please contact Ricardo Lyra ([email protected]).
Size: 53.7 KB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
Biometris/RABBIT
See https://biometris.github.io/RABBITManual/ for a full description
Language: Julia - Size: 5.32 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 0
GenEpi-psych-UMG/Two_Step_Imputation
Imputation workflow for array-type bias correction when combining multiple genotyping array types
Language: Shell - Size: 2.49 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1
