An open API service providing repository metadata for many open source software ecosystems.

Topic: "electron-microscopy"

pycroscopy/pycroscopy

Scientific analysis of nanoscale materials imaging data

Language: Jupyter Notebook - Size: 354 MB - Last synced at: 6 days ago - Pushed at: 3 months ago - Stars: 266 - Forks: 75

pycroscopy/atomai

Deep and Machine Learning for Microscopy

Language: Python - Size: 194 MB - Last synced at: 3 days ago - Pushed at: 6 days ago - Stars: 212 - Forks: 40

ELEKTRONN/elektronn3

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

Language: Python - Size: 3.1 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 164 - Forks: 29

seung-lab/cloud-volume

Read and write Neuroglancer datasets programmatically.

Language: Python - Size: 66.1 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 149 - Forks: 51

LaurentRDC/scikit-ued

Collection of algorithms and routines for (ultrafast) electron diffraction and scattering

Language: Python - Size: 24.2 MB - Last synced at: 4 days ago - Pushed at: 4 months ago - Stars: 142 - Forks: 21

kuixu/awesome-cryoem

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

Size: 528 KB - Last synced at: 22 days ago - Pushed at: over 4 years ago - Stars: 142 - Forks: 35

axondeepseg/axondeepseg

Axon/Myelin segmentation using Deep Learning

Language: Python - Size: 408 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 121 - Forks: 32

LiberTEM/LiberTEM

Open pixelated STEM framework

Language: Python - Size: 225 MB - Last synced at: 5 days ago - Pushed at: 22 days ago - Stars: 116 - Forks: 68

phonchi/Computational-CryoEM

A curated list of awesome computational cryo-EM methods.

Language: Jupyter Notebook - Size: 11.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 112 - Forks: 12

I2PC/scipion 📦

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

Language: Python - Size: 116 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 75 - Forks: 47

google-research/sofima

Scalable Optical Flow-based Image Montaging and Alignment

Language: Jupyter Notebook - Size: 4.73 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 73 - Forks: 16

instamatic-dev/instamatic

Python program for automated electron diffraction data collection

Language: Python - Size: 10 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 59 - Forks: 29

hyperspy/rosettasciio

Python library for reading and writing scientific data format

Language: Python - Size: 120 MB - Last synced at: 4 days ago - Pushed at: 6 days ago - Stars: 56 - Forks: 30

BAMresearch/automatic-sem-image-segmentation

Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images

Language: Jupyter Notebook - Size: 299 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 47 - Forks: 11

katrinleinweber/PhD-thesis

Experimental tech-demo for PhD thesis in Scientific Markdown; official:

Language: Shell - Size: 27.8 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 45 - Forks: 5

LBEM-CH/focus

High Throughput Electron Microscopy Image Processing Software

Language: C++ - Size: 123 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 38 - Forks: 15

phonchi/Computational-CryoET

A curated list of awesome computational cryo-ET methods.

Size: 174 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 36 - Forks: 1

FrangakisLab/ArtiaX

ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

Language: Python - Size: 3.62 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 33 - Forks: 4

pymontecarlo/pymontecarlo

Python interface for Monte Carlo simulation programs

Language: Python - Size: 15.7 MB - Last synced at: 15 days ago - Pushed at: over 3 years ago - Stars: 27 - Forks: 4

volume-em/cem-dataset

Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.

Language: Jupyter Notebook - Size: 46.1 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 1

JJPPeters/Strainpp

Implementation of geometric phase analysis (GPA) in C++

Language: C++ - Size: 2.04 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 7

volume-em/empanada-napari

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

Language: Python - Size: 8.3 MB - Last synced at: 10 days ago - Pushed at: 29 days ago - Stars: 23 - Forks: 9

TAdeJong/pyGPA

A python package collecting an assortment of geometric phase analysis algorithms and tools to analyse regular (moiré) lattices.

Language: Python - Size: 5.31 MB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 22 - Forks: 3

sami-chaaban/starparser

Manipulate and mine Relion .star files

Language: Python - Size: 7.09 MB - Last synced at: 29 days ago - Pushed at: 6 months ago - Stars: 19 - Forks: 4

ePSIC-DLS/particlespy

Package for analysing particles in electron microscopy data sets.

Language: Python - Size: 166 MB - Last synced at: 6 days ago - Pushed at: about 1 year ago - Stars: 19 - Forks: 10

pnnl/pychip_gui

pyCHIP is a tool for segmentation and feature classification in transmission electron microscopy (TEM) images based on a small support set of user-provided examples.

Language: HTML - Size: 105 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 19 - Forks: 3

pycroscopy/stemtool

A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality

Language: Python - Size: 266 MB - Last synced at: 28 days ago - Pushed at: 5 months ago - Stars: 18 - Forks: 3

emx77/ASI_MTF

Imagej macro to calculate the MTF based on a knife edge measurement

Language: ImageJ Macro - Size: 924 KB - Last synced at: 21 days ago - Pushed at: 5 months ago - Stars: 17 - Forks: 4

TAdeJong/LEEM-analysis

Quantitative Data Analysis for spectroscopic LEEM

Language: Jupyter Notebook - Size: 37.9 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 17 - Forks: 3

mgrady3/PLEASE

PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.

Language: Python - Size: 149 MB - Last synced at: 15 days ago - Pushed at: almost 4 years ago - Stars: 17 - Forks: 5

by256/imagedataextractor

ImageDataExtractor 2.0 - a Python library for electron microscopy image quantification.

Language: Python - Size: 126 MB - Last synced at: 21 days ago - Pushed at: about 4 years ago - Stars: 17 - Forks: 2

gabriel-ing/SimpliPyTEM

Package to make analysis of transmission electron microscopy images simple.

Language: Python - Size: 617 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 16 - Forks: 7

YuelongWu/feabas

Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data

Language: Python - Size: 857 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 16 - Forks: 5

WarwickMicroscopy/Felix

Felix: Bloch wave method diffraction pattern simulation software

Language: Fortran - Size: 348 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 16 - Forks: 10

ZacharyVarley/ebsdtorch

A PyTorch only Library for Electron Backscatter Diffraction (EBSD) Indexing

Language: Python - Size: 445 KB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 16 - Forks: 2

usnistgov/etspy

A Hyperspy extension package for processing and reconstructing electron tomography data

Language: Python - Size: 300 MB - Last synced at: 28 days ago - Pushed at: 2 months ago - Stars: 15 - Forks: 6

oinanoanalysis/h5oina

Oxford Instruments NanoAnalysis HDF5 File Specification

Size: 91.8 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 15 - Forks: 8

by256/bpartis

Bayesian Particle Instance Segmentation for Electron Microscopy Image Quantification (JCIM 2021).

Language: Python - Size: 23.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 6

lukmuk/em-scalebartools

Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.

Language: ImageJ Macro - Size: 60 MB - Last synced at: 21 days ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 1

brisvag/stemia

Scripts and Tools for Electron Microscopy Image Analysis.

Language: Python - Size: 218 KB - Last synced at: 28 days ago - Pushed at: 8 months ago - Stars: 11 - Forks: 1

PinkShnack/TEMUL

Functions for analysis of high resolution electron microscopy and spectroscopy data.

Language: Python - Size: 141 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 11 - Forks: 10

tjof2/pgure-svt

Singular value thresholding for denoising time-resolved microscopy

Language: C++ - Size: 7.59 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 11 - Forks: 4

jianglab/ctfsimulation

A CTF Simulation Web App

Language: Python - Size: 3.14 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 10 - Forks: 2

leon-vv/Traceon

Electromagnetic solver and electron tracer

Language: Python - Size: 10.7 MB - Last synced at: 10 days ago - Pushed at: 2 months ago - Stars: 9 - Forks: 5

instamatic-dev/pyserialem

Python module to read/write SerialEM navigator files.

Language: Python - Size: 161 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 4

slimpotatoes/STEM_Moire_GPA

STEM Moiré GPA software converting a STEM Moiré hologram into 2D deformation maps

Language: Python - Size: 36.4 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 8 - Forks: 2

by256/emps

Electron Microscopy Particle Segmentation Dataset

Size: 114 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 8 - Forks: 0

kit-data-manager/Metadata-Schemas-for-Materials-Science

Metadata Schemas for describing measurement techniques in Materials Science

Language: JavaScript - Size: 3.69 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 4

JJPPeters/clTEM

OpenCL accelerated multislice simulation for electron microscopy.

Language: C++ - Size: 5.72 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 3

ShkolniskyLab/kltpicker

KLT picker: Particle picking using data-driven optimal templates (Python version)

Language: Python - Size: 873 KB - Last synced at: 3 days ago - Pushed at: about 4 years ago - Stars: 7 - Forks: 0

ELEKTRONN/ELEKTRONN2

A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks, based on Theano

Language: Python - Size: 1.32 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 7 - Forks: 8

ArdaGen/STEM-Automated-Nanoparticle-Analysis-YOLOv8-SAM

S/TEM Automated Nanoparticle Analysis

Language: Python - Size: 65.9 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 6 - Forks: 1

LBEM-CH/focustools

Python utilities for the FOCUS package

Language: Jupyter Notebook - Size: 32 MB - Last synced at: 12 days ago - Pushed at: almost 2 years ago - Stars: 6 - Forks: 0

jewettaij/visfd

volumetric image toolkit for simple feature detection (segment tomograms)

Language: C++ - Size: 2.81 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 2

akhadangi/EM-net

This repository is official implementation of "EM-net: Deep learning for electron microscopy image segmentation" on Google Colab.

Language: Jupyter Notebook - Size: 44.5 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 3

smribet/DIY_4DSTEM

DIY: Using Python to Process 4D STEM data, code for NUANCE/Gatan virtual workshop on December 9, 2020.

Language: Jupyter Notebook - Size: 42.1 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 5

LiberTEM/LiberTEM-blobfinder

LiberTEM correlation and refinement library

Language: Jupyter Notebook - Size: 35.4 MB - Last synced at: 15 days ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 3

sarastokes/SBFSEM-tools

Matlab toolbox for connectomics analysis and rendering

Language: MATLAB - Size: 44.9 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 5 - Forks: 7

ju-bar/JMultiSliceLib

C++ library with implementations of the multislice algorithm for electron diffraction calculations, CPU and GPU code

Language: C++ - Size: 166 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 2

NDLOHGRP/ReCoDe

Reduced Compressed Description for Direct Electron Microscopy Data

Language: C - Size: 129 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0

lpolerecky/LANS

A MATLAB-based program for processing and analysis of nanoSIMS data

Language: MATLAB - Size: 64.4 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 3 - Forks: 0

AUSAXS/AUSAXS

Repository for the AUSAXS software package

Language: C++ - Size: 62.7 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 3 - Forks: 2

NDLOHGRP/pyReCoDe

Reduced Compressed Description for Direct Electron Microscopy Data

Language: Python - Size: 18.5 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

jewettaij/sabl_mpl

A hacky spline drawing program for measuring features in EM images

Language: Python - Size: 4.13 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 1

rajanprabu/cryoem-scripts

helper scripts for Electron microscopy data processing

Language: Python - Size: 521 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 1

tjof2/phd-thesis

Single atom imaging with time-resolved electron microscopy

Size: 22 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 1

mgrady3/pLEASE-legacy 📦

python Low Energy Electron Analysis SuitE

Language: Python - Size: 4.39 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 3 - Forks: 2

danscotson/ScaleBarIT

User interface to add customisable scale bars to images.

Size: 9.84 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 2 - Forks: 0

jabae/Cmito

Mitochondria detection in C. elegans EM images.

Language: Jupyter Notebook - Size: 68.5 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 1

mpfi-dsp/GoldInAndOut

🔬🥇🧠🍔 Automated Gold Particle Analysis For Freeze Fracture Replica Electron Microscopy Images

Language: Python - Size: 330 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 3

jabae/Cnapse

Automated synapse detection in C. elegans EM images.

Language: Jupyter Notebook - Size: 11.3 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

arthijayaraman-lab/semi-supervised_learning_microscopy_images

Language: Jupyter Notebook - Size: 23.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

volume-em/empanada

Panoptic segmentation algorithms for 2D and 3D electron microscopy images

Language: Python - Size: 25.6 MB - Last synced at: about 7 hours ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1

I2PC/scipion-web

Web app for the Scipion Framework

Language: C++ - Size: 99.4 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1

matbryan52/microscopy-images-qem

Presentation for QEM2025: "Digital Images"

Language: HTML - Size: 78 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 1 - Forks: 0

integrativemodeling/nup82

Modeling of the Nup82 subcomplex of the Nuclear Pore Complex

Language: Python - Size: 206 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

Br0Fi/goscalc

Calculate the total generalized oscillator strength for atomic orbitals

Language: C++ - Size: 16.5 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

duc-ng/cryo-em-monitor

Monitoring application for Cryo-EM data of the Max Planck Institute of Biochemistry.

Language: JavaScript - Size: 118 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

BSEL-UC3M/FRU-Net-TEM-segmentation

Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images

Language: Jupyter Notebook - Size: 2.22 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1

wagenadl/gvox

Visualization of gigavoxel volume with tracing functionality

Language: C++ - Size: 117 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 2

integrativemodeling/sea

Modeling of the SEA complex

Language: HTML - Size: 27.8 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

MaMMoS-project/sem_io

Python code to help extract metadata parameters from SEM images

Language: Python - Size: 50.8 KB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

matbryan52/microscopy-images-qem-practical

QEM2025 Images Practical

Language: Python - Size: 554 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

RifaMc/ParticleAnalyzer

A Computer Vision-based tool for automatic segmentation and size analysis of particles in Scanning Electron Microscope (SEM) images.

Size: 1000 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

SwissOpenEM/swissopenem.github.io

Project website

Language: HTML - Size: 28.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 2

integrativemodeling/nup84

Modeling of the Nup84 subcomplex of the Nuclear Pore Complex

Language: Python - Size: 666 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1

integrativemodeling/mediator

Modeling of the yeast Mediator complex

Language: Python - Size: 338 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

JiangYi0311/Mito-SegEM

A mitochondrial analysis tool for the vEM dataset.

Language: Python - Size: 6.17 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

ECLIPSE-Lab/End2EndPtychoTomo_code

Code for the paper: "Near-Isotropic Sub-Ångstrom 3D Resolution Phase Contrast Imaging Achieved by End-to-End Ptychographic Electron Tomography"

Language: Python - Size: 115 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

blleng/convert-emd

A tool for exporting data from EMD (Velox) files

Language: Python - Size: 65.4 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Jacob-Watkiss/Felix---Python

This is the Python version of the Felix Bloch code written by the University of Warwick Microscopy group.

Language: Python - Size: 38.1 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 2

ajinkyakadu/LiquidET_NatComm2024

The code for reconstruction algorithm and post-processing of electron tomographic series of colloidal particles acquired in liquid

Language: MATLAB - Size: 62.6 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

integrativemodeling/tfiih

Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps

Language: Python - Size: 148 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

computational-cell-analytics/Probabilistic-Domain-Adaptation

Probabilistic Domain Adaptation for Biomedical Image Segmentation

Language: Python - Size: 53.7 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

tiffanyhuff/AlignEMSwiftNGApp

An API to interactively run the AlignEM-SWiFT NG v0.3.5 software on the Lonestar6 supercomputer.

Language: Shell - Size: 7.81 KB - Last synced at: 11 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

Acylation/DLSilicaSpheres

Using deep learning methods to recognize and measure silica spheres in SEM pictures.

Size: 32.3 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

PhilippPelz/dptycho

Low-dose cryo electron ptychography via non-convex Bayesian optimization

Language: Lua - Size: 75.2 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

donglaiw/zwatershed Fork of jakirkham/zwatershed

Cython functions for zwatershed

Language: C++ - Size: 1.44 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 3

ofir-frd/Automatic-Size-Calculation

In this work an automatic code for collection of the CuS nanoparticles thickness and width is suggested. The code is written in Matlab and uses its advanced image processing tools. Bright field TEM images were produced using Ilse Katz Institute for Nanoscale Science & Technology TEM JEM-1230 (T-12). The images were converted from DigitalMicrograph ‘.dm’ format to ‘.TIF’ files. Graphical and statistical analyze of the ‘.TIF’ files was conducted using Origin and Statistica software.

Language: MATLAB - Size: 3.91 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

akhadangi/EM-stellar

This repository is official implementation of "EM-stellar: benchmarking deep learning for electron microscopy image segmentation" on Google Colab.

Language: Jupyter Notebook - Size: 2.18 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

Related Topics
deep-learning 18 python 16 image-processing 14 segmentation 13 microscopy 11 cryo-em 10 connectomics 7 cryoem 6 structural-biology 5 comparative-models 5 cross-linking 5 integrative-modeling 5 biomedical-image-processing 5 tem 5 3d-reconstruction 5 semantic-segmentation 5 machine-learning 5 tomography 5 materials-science 5 image-analysis 4 convolutional-neural-networks 4 physics 4 image-segmentation 4 data-analysis 4 neuroscience 4 python3 4 instance-segmentation 4 electron-microscopy-datasets 4 pytorch 4 x-ray-crystallography 4 stem 3 matlab 3 benchmarking 3 mitochondria 3 simulation 3 computer-vision 3 single-particle-analisys 2 raman 2 materials 2 image 2 biochemistry 2 panoptic-segmentation 2 3d 2 scalebar 2 data-processing 2 2d 2 science 2 gui 2 relion 2 ebsd 2 electron-backscatter-diffraction 2 direct-electron-detectors 2 particle-picking 2 data-compression 2 optimisation 2 ptychography 2 image-registration 2 computational-biology 2 cryo-et 2 leem 2 numpy 2 small-angle-xray-scattering 2 chemistry 2 electron-diffraction 2 surface-science 2 myelin 2 material-science 2 microscopy-images 2 microanalysis 2 signal-processing 2 deeplearning 2 visualization 2 3d-cnn 2 3d-convolutional-network 2 scanning-probe-microscopy 2 imagej 2 biology 2 imaging 2 eels 2 low-energy-electron-microscopy 1 parallel-programming 1 data-visualization 1 characterisation 1 optical-microscopy 1 nanoparticle-analysis 1 sam 1 yolov8 1 gpu-acceleration 1 orientations 1 pytorch-implemention 1 spherical-harmonics 1 big-data 1 chunked-image 1 4d 1 imagej-macro 1 yolo 1 sem-image-analysis 1 scientific-research 1 particle-analysis 1 object-detection 1