BioJulia/FASTX.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.

Language: Julia - Size: 1.09 MB - Last synced at: 7 days ago - Pushed at: 7 months ago - Stars: 63 - Forks: 20

cobilab/cryfa

A secure encryption tool for genomic data

Language: C++ - Size: 26 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 55 - Forks: 14

suchapalaver/fastas2kmers

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Language: Python - Size: 17.6 KB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 9 - Forks: 0

biocpp/biocpp-io

BioC++ Input/Output library

Language: C++ - Size: 1.03 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 6

xapple/fasta

This package enables you to deal with biological sequence files easily.

Language: Python - Size: 2.65 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 4

BTalamantesBecerra/omicR

omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.

Language: Python - Size: 11.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 2

abhijeetsingh1704/DupRemover

Removes duplicate sequences in multifasta file

Language: Python - Size: 49.8 KB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 3

biodata-fun/fasta_parser

Small package used to parse a file in the Fasta format

Language: C++ - Size: 40 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

aaiezza/FLiCK

FLiCK - Format LeveragIng Compression frameworK

Language: Java - Size: 1.36 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 0

sharkLoc/fakit

fakit: a simple program for fasta file manipulation

Language: Rust - Size: 3.08 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 1 - Forks: 0

UDC-GAC/hsp

Hadoop Sequence Parser (HSP) library

Language: Java - Size: 86.9 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

exTerEX/pdb2fasta 📦

A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.

Language: C - Size: 725 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

abhijeetsingh1704/fastA2Q

simple and convenient program to convert fasta sequences to fastq sequences

Language: Shell - Size: 42 KB - Last synced at: 2 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 1

laurentnoe/storm

Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)

Language: C - Size: 2.47 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

bhagesh-codebeast/Bioinformatics

Language: Jupyter Notebook - Size: 1000 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

haschka/emacs-fasta-mode

A mode for fasta files

Language: Emacs Lisp - Size: 26.4 KB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Matthew-Mosior/idris2-biofasta

Idris (Idris2) port of the Haskell biofasta library.

Language: Idris - Size: 13.7 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

Matthew-Mosior/idris2-biocore

Idris (Idris2) port of the Haskell biocore library.

Language: Idris - Size: 9.77 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

CaileanCarter/EMBLtoFASTA

Convert EMBL files to FASTA

Language: Python - Size: 16.6 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

sgelias/csv2fas

Parse CSV files containing fasta components to a true fasta file.

Language: Python - Size: 0 Bytes - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

HounerX/Fasta_Splitter

Fasta_splitter

Language: Shell - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

jlboat/Faidx

Index FASTA file

Language: Java - Size: 20.5 KB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

jakubpas/alignment-java

Java implementation of global alignment using a variation of Levenshteindistance. It takes first two sequences from fasta file and returns aligned sequences also in fasta format.

Language: Java - Size: 2.93 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

verheytb/fdemux

fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.

Language: Python - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

sinnamone/converting_utility

converter raw sequence files

Language: Python - Size: 5.86 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

mooreryan/grep_fasta

Grep sequences from a fasta file

Language: Scheme - Size: 2.93 KB - Last synced at: about 17 hours ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0