Topic: "genomic-regions"
tseemann/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Language: Perl - Size: 15.5 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 430 - Forks: 97
bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
Language: HTML - Size: 6.8 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 52 - Forks: 15
epigen/enrichment_analysis
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Language: Python - Size: 1.81 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 40 - Forks: 3
epigen/genome_tracks
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Language: Python - Size: 89.8 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 24 - Forks: 1
databio/bedshift
Bedfile perturbation tool
Language: Python - Size: 728 KB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 17 - Forks: 3
bernatgel/regioneR
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
Language: R - Size: 1.17 MB - Last synced at: 13 days ago - Pushed at: 2 months ago - Stars: 13 - Forks: 3
remap-cisreg/ReMapEnrich
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Language: HTML - Size: 13.9 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 12 - Forks: 5
stevekm/reference-annotations
Makefile for reference annotations for genes & genomic regions
Language: Makefile - Size: 13.7 KB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 8 - Forks: 4
tkonopka/GeneticThesaurus
Thesaurus for genetic variants
Language: Java - Size: 1.2 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 8 - Forks: 1
dancooke/mappable
C++ library for genomic region based storage and querying
Language: C++ - Size: 88.9 KB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 6 - Forks: 0
aaszodi/multovl
Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.
Language: C++ - Size: 2.63 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 0
hyperbrowser/genomic-hyperbrowser Fork of elixir-oslo/proto
The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01
Language: Python - Size: 364 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1
sraghav-lab/Bedsect
BedSect web server source code repository.
Language: PHP - Size: 2.57 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
stevekm/fastq-bed-subset
Filter fastq file based on bed regions
Language: Nextflow - Size: 16.6 KB - Last synced at: 5 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 1
dansta0804/TF_analysis
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
Language: R - Size: 2.82 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
