Topic: "metagenomic-classification"
FOI-Bioinformatics/flextaxd
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Language: Python - Size: 1.06 MB - Last synced at: 23 days ago - Pushed at: about 2 months ago - Stars: 65 - Forks: 8
muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Language: C++ - Size: 149 MB - Last synced at: 28 days ago - Pushed at: about 1 month ago - Stars: 59 - Forks: 13
taxprofiler/taxpasta
TAXnomic Profile Aggregation and STAndardisation
Language: Python - Size: 1.98 MB - Last synced at: 5 days ago - Pushed at: 6 months ago - Stars: 39 - Forks: 8
prophyle/prophyle
Accurate, resource-frugal and deterministic DNA sequence classifier.
Language: Python - Size: 30.3 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 34 - Forks: 5
treangenlab/lemur
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Language: Python - Size: 58.6 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 24 - Forks: 1
EBI-Metagenomics/pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Language: HTML - Size: 376 MB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 21 - Forks: 20
pfeiferd/genestrip
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
Language: Java - Size: 94.7 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 6 - Forks: 0
rcs333/CLOMP
:horse: CLinically Okay Metagenomic Pipeline :horse:
Language: Python - Size: 311 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 3
dubssieg/wisp
XGBoost implementation for bacteria family identification
Language: Python - Size: 420 MB - Last synced at: about 13 hours ago - Pushed at: about 14 hours ago - Stars: 4 - Forks: 0
hivlab/discover-virome
discover-virome: identify and quantify viruses from metagenomic assemblies
Language: Python - Size: 13 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1
sunbeam-labs/sbx_krakenhll
Size: 22.5 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 2
laurentnoe/iedera
subset and spaced seed design tool
Language: C++ - Size: 1.26 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1
bo1929/CONSULT-II Fork of noraracht/CONSULT
Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.
Language: C++ - Size: 21.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
pfeiferd/genestrip-db
A selection of databases for Genestrip
Language: Shell - Size: 80.1 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 1 - Forks: 0
lbl-cbg/gtnet
The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
Language: Python - Size: 58.4 MB - Last synced at: 20 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
sablokgaurav/metapanran
MetaPanRan bring togthers Roary, PEPPAN, Pirate and PanROO for the comparative analysis of metagenomes and performs indepth analysis on evolutionary scales
Language: R - Size: 123 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
bersilin-robert1609/CS6024-AACB-Metagenomic-Analysis
Contains all the code and data related to the CS6024 - Algorithmic Approaches to Computational Biology in the topic: Disease detection using metagenomic dataset
Language: Jupyter Notebook - Size: 31.7 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
hsmurali/Transitive_Annotation
The impact of transitive annotation on the training of taxonomic classifiers
Language: Jupyter Notebook - Size: 2.43 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
