Topic: "subclone-identification"
AntonioDeFalco/SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
Language: HTML - Size: 63 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 100 - Forks: 25
caravagnalab/mobster
Model-based subclonal deconvolution from bulk sequencing.
Language: HTML - Size: 126 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 33 - Forks: 8
keyuan/ccube
Bayesian mixture models for estimating and clustering cancer cell fractions
Language: R - Size: 697 KB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 8
zengliX/SIFA
SIFA: identify tumor subclones and infer phylogenetic tree from WGS data
Language: R - Size: 2.16 MB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 0
Subhayan18/CRUST
R package for clonal deconvolution
Language: R - Size: 12.1 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1
