microenvironment | Topic | Ecosyste.ms: Repos

Topic: "microenvironment"

sqjin/CellChat 📦

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Language: R - Size: 45.4 MB - Last synced at: 23 days ago - Pushed at: over 1 year ago - Stars: 693 - Forks: 158

jinworks/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Language: R - Size: 71.5 MB - Last synced at: about 8 hours ago - Pushed at: about 1 month ago - Stars: 403 - Forks: 68

LirongWu/MAPE-PPI

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

Language: Python - Size: 6.81 MB - Last synced at: 4 days ago - Pushed at: 11 months ago - Stars: 264 - Forks: 43

digitalcytometry/ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

Language: R - Size: 663 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 151 - Forks: 38

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

Language: HTML - Size: 63 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 100 - Forks: 25