a-r-j/graphein

Protein Graph Library

Language: Jupyter Notebook - Size: 86.8 MB - Last synced at: 24 days ago - Pushed at: 2 months ago - Stars: 1,084 - Forks: 134

LirongWu/MAPE-PPI

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

Language: Python - Size: 6.81 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 258 - Forks: 45

chao1224/SGNN-EBM

Structured Multi-task Learning for Molecular Property Prediction, AISTATS'22 (https://proceedings.mlr.press/v151/liu22e.html)

Language: Python - Size: 468 KB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 13 - Forks: 0

pievos101/Ensemble-GNN

Ensemble learning with graph neural networks for disease module discovery and classification

Language: Python - Size: 992 KB - Last synced at: 15 days ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 1

THinnerichs/DTI-VOODOO

A PPI network driven approach to drug-target-interaction prediction using deep graph learning methods.

Language: TeX - Size: 406 MB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 2

paulmorio/protclus

Python 3 library implementing a number of topological clustering techniques used on protein-protein interaction networks.

Language: Python - Size: 1.06 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 2

ylaboratory/ETNA

Embeddings to Network Alignment - align biological networks between two species

Language: Python - Size: 1.69 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 4

aGalhoz/wppi

Gene prioritisation tool using a weighted network methodology based on Gene Ontology and Human Phenotype Ontology annotations to infer closely related genes to given genes of interest.

Language: R - Size: 1.78 MB - Last synced at: 10 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

sevmardi/Protein-Protein-Networks

Evaluate a strategy for predicting cancer-related proteins in PPI networks.

Language: Python - Size: 1.18 MB - Last synced at: 19 days ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 4

milagjurovska/PPI-link-prediction-with-optimized-gcn-and-gan

Comparing different biologically inspired algorithms in hyperparameter tuning in GCN and GAN models for link prediction in a protein-protein interaction network.

Language: Jupyter Notebook - Size: 1.8 MB - Last synced at: about 11 hours ago - Pushed at: about 11 hours ago - Stars: 0 - Forks: 0

merlinis12/Downstream-Analysis-of-RNA-Seq-Results

Downstream Analysis of RNA-Seq Results in R: GSEA, PPI Networks, and Biological Interpretation

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darwinsorchid/Biological-Networks

[R] Generating Protein-Protein Interaction Networks using R and Quarto publishing system in HTML format.

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daqh/hypergraph-extensions-for-biological-networks

[a.a. 23/24] V. Di Pasquale - Utilizzare i motif delle PPI network per ottenere migliori performance nell'esecuzione dei task di link-prediction e function-prediction.

Language: Python - Size: 326 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

ylaboratory/splitpea

A tool for calculating PPI network rewiring due to alternative splicing

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Barabasi-Lab/NonCoding

Codes for the paper entitled: Non-Coding RNAs Improve the Predictive Power of Network Medicine

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MateJozsaPhys/CNDinvestigation

Opportunities and challenges in partitioning the graph measure space of real-world networks

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sysbiolux/MD_network_map

Language: Python - Size: 2.42 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0