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GitHub / jackbibby1 / SCPA
R package for pathway analysis in scRNA-seq data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackbibby1%2FSCPA
Stars: 53
Forks: 4
Open Issues: 1
License: gpl-3.0
Language: R
Repo Size: 41.2 MB
Dependencies:
18
Created: over 2 years ago
Updated: 2 days ago
Last pushed: 2 days ago
Last synced: 2 days ago
Topics: differential-expression, gene-signatures, pathway-analysis, r-package, single-cell, single-cell-rna-seq, transcriptomics
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Dependencies
DESCRIPTION
cran
- R >= 2.10 depends
- ComplexHeatmap >= 2.13.1 imports
- Seurat >= 4.1.1 imports
- circlize * imports
- dplyr >= 1.0.9 imports
- ggplot2 >= 3.3.6 imports
- ggrepel >= 0.9.1 imports
- magrittr >= 2.0.3 imports
- msigdbr >= 7.5.1 imports
- multicross >= 2.1.0 imports
- purrr >= 0.3.4 imports
- stats >= 4.1.0 imports
- stringr >= 1.4.0 imports
- tibble >= 3.1.7 imports
- tidyr >= 1.2.0 imports
- utils >= 4.1.0 imports
- knitr * suggests
- rmarkdown * suggests