GitHub / macs3-project / genomics-analysis-pipelines
Pipeline codes for analyzing various genomics datasets based on MACS3
JSON API: http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/macs3-project%2Fgenomics-analysis-pipelines
PURL: pkg:github/macs3-project/genomics-analysis-pipelines
Fork of taoliulab/genomics-analysis-pipelines
Stars: 7
Forks: 6
Open issues: 0
License: bsd-3-clause
Language: Python
Size: 1.48 MB
Dependencies parsed at:
45
Created at: over 4 years ago
Updated at: about 1 month ago
Pushed at: about 1 month ago
Last synced at: about 1 month ago
Topics: atac-seq-pipeline, chip-seq-pipeline
environment.yaml
conda
- bedtools >=2.29.2
- bioconductor-chipseeker
- bioconductor-clusterprofiler
- bioconductor-complexheatmap
- bioconductor-deseq2
- bioconductor-do.db
- bioconductor-go.db
- bioconductor-org.hs.eg.db
- bioconductor-seqlogo >=1.46.0
- bioconductor-txdb.hsapiens.ucsc.hg38.knowngene
- bwa
- deeptools
- fastqc
- homer >=4.7
- macs2 >=2.2.7.1
- meme
- numpy >=1.17.3
- picard
- python >=3.7
- r-base >=4.0.2
- r-bslib
- r-clisymbols
- r-cpp11
- r-ggplot2
- r-gplots
- r-httpuv
- r-jquerylib
- r-kableextra
- r-knitr
- r-rmarkdown
- r-rvest
- r-sass
- r-selectr
- r-shiny
- r-sourcetools
- r-svglite
- r-systemfonts
- r-tinytex
- r-webshot
- samtools >=1.9
- snakemake >=5
- ucsc-bedclip
- ucsc-bedgraphtobigwig