BBMRI-ERIC/negotiator-frontend

The BBMRI-ERIC Negotiator is a service for structured negotiation with biological resources dealing with human data and/or biological samples. The reference implementation for the frontend is available in this repository.

Language: Vue - Size: 4.07 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 2

BBMRI-ERIC/negotiator

An Open-source access negotation system for Research Infrastructures

Language: Java - Size: 6.14 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 6

kenhanscombe/ukbtools

An R package to manipulate and explore UK Biobank data

Language: HTML - Size: 11.2 MB - Last synced: 11 days ago - Pushed: over 1 year ago - Stars: 91 - Forks: 25

BBMRI-ERIC/miabis

The Minimum Information About BIobank data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of minimal biobank-related data for different purposes across a wide range of database implementations.

Size: 1.56 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 12 - Forks: 10

marksgraham/OCT-Converter

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

Language: Python - Size: 94.2 MB - Last synced: 24 days ago - Pushed: about 2 months ago - Stars: 183 - Forks: 66

BBMRI-cz/fhir-module

A data integration tool for BBMRI-ERIC biobanks.

Language: Python - Size: 239 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 1

molgenis/molgenis

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Language: Java - Size: 165 MB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 109 - Forks: 99

AberystwythSystemsBiology/limbus

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

Language: Python - Size: 10.5 MB - Last synced: 9 days ago - Pushed: 8 months ago - Stars: 29 - Forks: 4

rivas-lab/snpnet

snpnet - Efficient Lasso Solver for Large-scale genetic variant data

Language: R - Size: 7.52 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 17 - Forks: 3

BBMRI-ERIC/negotiator-v2 📦

The BBMRI-ERIC Negotiator service for structured negotiation with biological resources dealing with human data and/or biological samples.

Language: Java - Size: 6.56 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 5 - Forks: 5

CBSR-Biobank/biobank

Biorepository application for tracking biospecimens.

Language: Java - Size: 166 MB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 20 - Forks: 15

TIBHannover/BacDiveR

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

Language: R - Size: 3.22 MB - Last synced: 28 days ago - Pushed: about 2 years ago - Stars: 11 - Forks: 12

hakyimlab/ukbrest

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Language: Python - Size: 16.4 MB - Last synced: 2 months ago - Pushed: almost 3 years ago - Stars: 37 - Forks: 21

hdg204/Rdna-nexus

Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench

Language: R - Size: 66.4 KB - Last synced: 2 months ago - Pushed: 7 months ago - Stars: 5 - Forks: 0

CBSR-Biobank/bbweb

Biobank Web Application

Language: Scala - Size: 14 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 16 - Forks: 15

chrmey/SPRECLib

Java Library that implements the Sample PREanalytical Code Version 2 from ISBER

Language: Java - Size: 1.11 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

sjharw/Biobank-Prioritisation-Tool

This project provides a tool to assist biobanks with prioritising species for conservation and research.

Language: Python - Size: 7.22 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

samply/bbmri-fhir-ig

This is the source for the BBMRI.de / GBA Implementation Guide.

Language: GLSL - Size: 269 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 6 - Forks: 0

christacaggiano/treeWas-exploration

exploration of TreeWas/TreeWas2 code for the Zaitlen lab. Based on TreeWas developed by McVean Lab @ Oxford.

Language: HTML - Size: 24.4 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

jlc-christie/axivity-ax3-tool

Command line tool written in c++ for easily extracting light and temperature data from Axivity AX3 accelerometers used in the UKBiobank

Language: C++ - Size: 2.78 MB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 3 - Forks: 4

evankiely/OpynSpecimen

An object oriented wrapper and tooling for the OpenSpecimen API, written in Python

Language: Python - Size: 306 KB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

lwaw/UK-Biobank-scraper

A script that will download meta-data from the UK Biobank website (https://www.ukbiobank.ac.uk).

Language: Python - Size: 5.86 KB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

rivas-lab/multisnpnet-Cox

Multiresponse time-to-event Cox proportional hazards model - CPU

Language: R - Size: 167 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

WTobor/Biobank

Development medical module software for biobank.

Language: C# - Size: 2.82 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 1 - Forks: 1

rivas-lab/multisnpnet-Cox_gpu

Multiresponse time-to-event Cox proportional hazards model - GPU

Language: C++ - Size: 103 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

BBMRI-cz/bbmri-export

This repository contains data description for BIMS export

Size: 3.91 KB - Last synced: 12 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

itcr-uni-luebeck/AutomatedStorageSystemTestProtocol

This repository provides our generic test protocol for the integration test of ASS.

Size: 161 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

IICTR/Columbia-COVID-19-Biobank-Questionnaires

Size: 6.22 MB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0