Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: biomedical-applications

BaranziniLab/KG_RAG

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

Language: Jupyter Notebook - Size: 9.85 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 368 - Forks: 51

EBISPOT/DUO

Ontology for consent codes and data use requirements

Language: Makefile - Size: 6.43 MB - Last synced: about 17 hours ago - Pushed: over 1 year ago - Stars: 61 - Forks: 15

chikuang/CVXSADes

CVXSADes: Construct exact regression designs using CVX in conjunction with simulated annealing

Language: MATLAB - Size: 897 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

callahantiff/PheKnowLator

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

Language: Python - Size: 43.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 139 - Forks: 25

danielyu2003/MotionLoop

An iOS app for conducting research involving human motion. Currently under development.

Language: Swift - Size: 63.5 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

mobashgr/WeLT

A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.

Language: Python - Size: 156 KB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 1

bioinformatics-ua/scaleus

Semantic Web Services Integration for Biomedical Applications

Language: JavaScript - Size: 2.41 MB - Last synced: about 2 months ago - Pushed: almost 7 years ago - Stars: 12 - Forks: 3

michiyasunaga/qagnn

[NAACL 2021] QAGNN: Question Answering using Language Models and Knowledge Graphs 🤖

Language: Python - Size: 1.51 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 549 - Forks: 100

anjanatiha/Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

Language: Jupyter Notebook - Size: 28 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 120 - Forks: 69

michiyasunaga/LinkBERT

[ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links

Language: Python - Size: 1.45 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 368 - Forks: 37

awcasella/Calculo-Numerico-UNIFESP-SJC-EngBio

This repository contains all the algorithms studied in discipline "Calculo Numerico" of Biomedical Engineering course at UNIFESP in the second semester of 2018.

Language: MATLAB - Size: 22.5 KB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1

sriram-lab/bme499

BME499 course materials

Language: HTML - Size: 166 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 1

vinayakumarr/ICMR

ICMR Sponsored Seminar On Deep Learning Techniques and Tools for Medical Applications

Language: Jupyter Notebook - Size: 1.7 MB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 14 - Forks: 9

nmstreethran/paper-based-microfluidics

My undergraduate honours project on paper-based microfluidics for animal disease detection

Size: 76.7 MB - Last synced: about 16 hours ago - Pushed: about 2 years ago - Stars: 5 - Forks: 0

mobashgr/Re-scaling-class-distribution-for-fine-tuning-BERT-based-models

WELT, a cost-sensitive trainer that handles the class imbalance for the task of biomedical NER

Language: Python - Size: 1.65 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

anjanatiha/Malaria-Parasite-Detection-in-Thin-Blood-Smear-Images-with-Convolutional-Neural-Networks

Malaria Detection from Cell Images using Deep Learning - NasNetMobile Model

Language: Jupyter Notebook - Size: 365 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 2

sid321axn/detecting-corona-using-Modified-Xceptionet

Detecting of COVID-19 induced Pneumonia in Chest X-ray Images using using Modified XceptionNet

Language: Jupyter Notebook - Size: 156 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

tamas-ferenci/BiomedicalApplicationsOfTimeSeriesAnalysis

Biomedical Applications of Time Series Analysis

Language: R - Size: 2.07 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

Related Keywords
biomedical-applications 18 biomedical-image-analysis 4 medical-imaging 3 image-recognition 3 medical-image-analysis 3 medical-application 3 knowledge-graph 3 biomedical-image-processing 3 machine-learning 2 biomedical-data-science 2 convolutional-neural-networks 2 chest-xray-images 2 obofoundry 2 owl 2 question-answering 2 regression 2 language-model 2 biomedical-engineering 2 deep-neural-networks 2 ner 2 cost-sensitive-learning 2 semantic-web 2 keras 2 keras-tensorflow 2 medical-image-computing 2 medical-image-processing 2 biomedical-informatics 2 pneumonia-detection 2 numerical-methods 1 numerical-integration 1 unifesp 1 ai 1 bme499 1 numerical-algorithms 1 engenharia-biomedica 1 calculo-numerico 1 biomedical-signal-processing 1 transformer 1 pretraining 1 pretrained-models 1 knowledge 1 graph-machine-learning 1 data-science 1 computer-vision 1 convolutional-neural-network 1 deep-learning 1 image-classification 1 nasnet 1 nasnetmobile 1 chest-xrays 1 covid-19 1 covid-19-data 1 deep-convolutional-neural-networks 1 pneumonia-detection-webapp 1 pneumoniac-xray 1 radiology-machine-learning 1 xception-model 1 time-series 1 time-series-analysis 1 data-visualization 1 decision-trees 1 hypothesis-testing 1 matlab 1 neural-networks 1 random-forest 1 unsupervised-learning 1 cad 1 diagnostics 1 lab-on-a-chip 1 mechanical-engineering 1 medical-device 1 microfluidics 1 classimbalance 1 huggingface-transformers 1 tokenclassification 1 tensorflow 1 hacktoberfest 1 bioregistry 1 biolink-model 1 benchmarks 1 optimal-designs 1 ontology 1 genomics-data 1 datasets-tagged 1 sentence-transformers 1 retrieval-augmented-generation 1 rag 1 prompt-tuning 1 prompt-engineering 1 llm 1 llama2 1 llama 1 large-language-models 1 knowledge-base 1 gpt4 1 gpt35turbo 1 gpt 1 context-aware 1 bioinformatics-algorithms 1 bioinformatics 1