Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: ecotoxicology

cvasi-tktd/cvasi.ui

Graphical user interface for ecotox effect modelling using the cvasi package

Language: R - Size: 231 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 0 - Forks: 0

cvasi-tktd/cvasi

R package to simulate ecotox TK/TD models, calculate effects, and derive effect profiles.

Language: R - Size: 4.66 MB - Last synced: about 1 hour ago - Pushed: 2 days ago - Stars: 0 - Forks: 1

ChrisMantegna/WDFWmussels

Biochemical biomarker analysis of mussels from 74 sites across Puget Sound from the WDFW 'Mussel Watch' program.

Language: HTML - Size: 62.6 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 2 - Forks: 0

bcgov/ssdtools

An R package to fit and plot Species Sensitivity Distributions (SSDs)

Language: R - Size: 76.1 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 29 - Forks: 16

open-AIMS/bayesnec

Bayesian No-Effect-Concentration estimation in R

Language: R - Size: 759 MB - Last synced: 9 days ago - Pushed: about 1 month ago - Stars: 10 - Forks: 6

StyrbjornKall/TRIDENT

A collection of transformer-based models and developmental scripts presented in the publication "Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms".

Language: Jupyter Notebook - Size: 1.39 GB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 4 - Forks: 1

mrmic1/FLX-mosquitofish-mesocosm Fork of theodi/data-publishing-template

Dataset for Pharmaceutical pollution disrupts freshwater communities and impairs their recovery from an invasive fish

Size: 163 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

ReMobidyc/ReMobidyc

web based multi-agent simulator for individual-based modeling in population dynamics and ecotoxicology

Language: Smalltalk - Size: 14.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 10 - Forks: 1

CIRAIG/IWP_Reborn

The rebirth of IMPACT World+ in a fully automated and transparent fashion.

Language: Python - Size: 84.6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 7 - Forks: 0

andschar/standartox

Standardising toxicity data

Language: R - Size: 4.18 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 13 - Forks: 3

flor14/shinyssd

✨📦👩‍💻 shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment - R-Shiny app

Language: R - Size: 14.7 MB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 5 - Forks: 3

tsufz/REcoTox

REcoTox is a semi-automated, interactive R workflow to process US EPA ECOTOX Knowledgebase entire database ASCII files

Language: HTML - Size: 1.88 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

StyrbjornKall/TRIDENT_application

Source code for the web application associated with "Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms".

Language: Python - Size: 867 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

zsteinmetz/envalysis

Miscellaneous Functions for Environmental Analyses

Language: R - Size: 6.13 MB - Last synced: 30 days ago - Pushed: 2 months ago - Stars: 7 - Forks: 0

nicholaswunz/BPA-meta-analysis

Paper - Effect of the plastic pollutant bisphenol A on the biology of aquatic organisms: A meta-analysis

Language: R - Size: 2.08 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

KyoHiki/drc_ecotox

Dose-response relationship analysis for ecotoxicity data

Language: R - Size: 229 KB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

KyoHiki/SSD_chronic_prediction

Prediction of chronic SSD

Size: 2.96 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

modelEAU/ELA_msl

Ecosystem model developped by Ludiwine Clouzot and Peter A. Vanrolleghem

Size: 49.8 KB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

yr542/MS_Thesis

This is a folder for my M.S. Thesis related information.

Size: 362 KB - Last synced: 6 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

gmoeu/transcriptional-biomarkers-metaanalysis

Data and R code to reproduce the results from 'Transcriptional responses as biomarkers of general toxicity' (Ekelund Ugge et al. 2022).

Size: 230 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

laurentboualit/Tadpoles_tracking

A R script for extracting tadpoles swimming behavior and morphological traits.

Language: R - Size: 9.77 KB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

pythonpandas303/KeyWest

In coordination with Regis University.

Language: Python - Size: 37.1 KB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

backmind/autoRICEWQ

This project aims to be a handler for input creation and running of multiple RICEWQ simulations.

Language: Python - Size: 587 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1

LucyDimitrova/plant-growth-inhibition-toxicity

Experiment data and analysis for calculating the effects of a toxicant (CuSO4.5H2O) on the growth of plants.

Language: HTML - Size: 1.54 MB - Last synced: 3 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

RaoulWolf/FMI330

Example R scripts to create a dose-response curve and extract ECx-values.

Language: R - Size: 1.97 MB - Last synced: 4 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 1

AvitBhowmik/gisapp18

This is the GitHub repository for the block course "Geoinformation Systems (GIS) Application" offered by the Institute for Environmental Sciences, University of Koblenz-Landau at the Winter Semester 2018. Please scroll below to read the instructions.

Language: TeX - Size: 30.8 MB - Last synced: 4 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 1

Related Keywords
ecotoxicology 26 r 4 toxicology 4 ecology 3 species-sensitivity-distribution 3 meta-analysis 2 toxic-unit 2 transformers 2 toxicity 2 rstats 2 modeling 2 biomarkers 2 simulation 2 rt-qpcr 1 publication-bias 1 metals 1 metallothionein 1 meta-regression 1 heat-shock-protein 1 glutathione-s-transferase 1 exposure-time 1 catalase 1 bivalve 1 aquatic-toxicology 1 thesis 1 tcdd 1 science-research 1 spatial-statistics 1 mercury 1 master-thesis 1 trophic-interactions 1 ppcp 1 micropollutants 1 mechanistic-models 1 hormone 1 plastic-pollution 1 dose-response-modeling 1 drc 1 tidyverse 1 waterflow 1 waterbalance 1 transport-model 1 ricewq 1 rice-crops 1 geostatistics 1 rice 1 spatial-analysis 1 spatial-data-analysis 1 python 1 pesticide-transport 1 modelling-biological-systems 1 chemical-engineering 1 agrochemical 1 gis 1 data-science 1 behavior 1 amphibians 1 transcriptional-biomarkers 1 tissue 1 systematic-review 1 superoxide-dismutase 1 life-history 1 acidification 1 simulator 1 population-dynamics 1 pharo 1 multi-agent-simulation 1 pharmaceuticals 1 mosquitofish 1 invasive-species 1 fluoxetine 1 community-ecology 1 algae 1 deep-learning 1 threshold-derivation 1 non-linear-decay 1 no-effect-concentration 1 concentration-response 1 bayesian-inference 1 env 1 sod 1 pugetsound 1 p450 1 mytilus 1 cecs 1 shiny-r 1 bpa 1 aquatic-organisms 1 soil 1 environment 1 chemistry 1 analytics 1 deep-neural-networks 1 hazard-assessment 1 enviromental-chemistry 1 ecotoxicology-knowlegdebase 1 data-retrieval 1 data-aggregation 1 ssd-curves 1 shinyapps 1