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GitHub topics: edlib

kojix2/ruby-edlib

ruby-edlib is a wrapper for edlib

Language: C++ - Size: 155 KB - Last synced at: 22 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 1

CMU-SAFARI/SneakySnake

SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

Language: VHDL - Size: 21.2 MB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 48 - Forks: 11

Related Keywords
edlib 2 bioinformatics 1 ruby 1 fpga 1 gpu 1 hardware-accelerator 1 long-reads 1 minimap2 1 needleman-wunsch 1 pre-alignment-filtering 1 sequence-aligner 1 sequence-alignment 1 short-reads 1 smith-waterman 1 wavefront-alignment 1