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GitHub topics: sequence-aligner

dwpeng/bsalign-rs

Rust bindings for bsalign. An SIMD-based C library for fast partial order alignment and pairwise alignment.

Language: Rust - Size: 124 KB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 2 - Forks: 0

tmaklin/kbo-gui

Graphical web user interface for the kbo local aligner built with Dioxus

Language: Rust - Size: 217 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

CMU-SAFARI/SneakySnake

SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.

Language: VHDL - Size: 21.2 MB - Last synced at: 8 months ago - Pushed at: about 2 years ago - Stars: 48 - Forks: 11

Related Keywords
sequence-aligner 3 wavefront-alignment 1 smith-waterman 1 short-reads 1 sequence-alignment 1 pre-alignment-filtering 1 needleman-wunsch 1 minimap2 1 long-reads 1 hardware-accelerator 1 gpu 1 fpga 1 edlib 1 webassembly 1 wasm 1 sbwt 1 rust 1 kbo 1 genomics 1 dioxus 1 bioinformatics 1 poa 1 multi-sequences-alignment 1 bsalign 1