GitHub topics: edna-pipeline
NickJeff13/eDNA-for-MPAs
eDNA metabarcoding code for Marine Protected Area monitoring
Language: R - Size: 525 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 5 - Forks: 2
adriantich/MJOLNIR3
Metabarcoding Joining Obitools3 & Linkage Networks In R
Language: R - Size: 57.7 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 3 - Forks: 0
lexscience/Deep-oxygen-depleted-depressions-in-a-Red-Sea-coral-reef-sustain-resistant-ecosystems
Code and repository links for Klein & Frühe et al. 2024
Language: R - Size: 416 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
tao-bioinfo/MiFish
This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
Language: Python - Size: 9.66 MB - Last synced at: 2 months ago - Pushed at: 12 months ago - Stars: 20 - Forks: 3
metabaRfactory/metabaR
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
Language: HTML - Size: 135 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 14 - Forks: 3
AnneSoBen/obitools_workflow
A snakemake workflow based on the obitools suite of programs, that analyzes DNA metabarcoding data.
Language: Python - Size: 64.5 KB - Last synced at: 20 days ago - Pushed at: 8 months ago - Stars: 4 - Forks: 2
thierrygosselin/gotedna
Guidance on optimal eDNA sampling periods to develop, optimize and interpret monitoring programs
Language: R - Size: 860 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
walterxie/eDNA-pipeline
eDNA pipeline
Language: R - Size: 63.9 MB - Last synced at: 27 days ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0
metabaRfactory/metabaR_external_data
repository of data examples for the R package metabaR
Size: 16.1 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0