GitHub topics: fragmentomics

Repositories

BesenbacherLab/lionheart

LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.

Language: Python - Size: 726 KB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 5 - Forks: 1

sitara-21/Multiple-Instance-Learning

MIL to classify samples using fragments

Language: Python - Size: 61.5 KB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0

epifluidlab/FinaleToolkit

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

Language: Python - Size: 82.5 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 24 - Forks: 9

amatov/TumorAgnosticUMI

Language: R - Size: 715 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

amatov/FragmentomicsSubclinicalDisease

Language: R - Size: 298 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Related Keywords

fragmentomics 5 rectal-adenoma 2 rectal-cancer 2 cell-free-dna 2 cfdna 2 whole-genome-sequencing 2 colon-cancer 2 colon-adenoma 2 scikit-learn 1 sensitivity-specificity 1 tumor-agnostic-approach 1 ultra-deep-sequencing 1 unique-molecular-identifiers 1 bile-duct-cancer 1 breast-cancer 1 deep-learning 1 dna-fragment-length 1 duodenal-cancer 1 early-detection 1 early-detection-of-disease 1 fragmentation-patterns 1 gastric-cancer 1 identify-disease-stage 1 lung-cancer 1 ovarian-cancer 1 pancreatic-cancer 1 sub-clinical-disease 1 cancer-detection 1 cancer-genomics 1 chromatin-accessibiity 1 multiple-instance-learning 1 bioinformatics 1 bioinformatics-tool 1 computational-biology 1 epigenomics 1 genomics 1 genomics-analysis 1 blacklisting-filter 1 clinical-trials 1 detect-recurrence 1 detection-error-rates 1 dna-fragmentation-patterns 1 error-rates 1 lasso-regression 1 limit-of-detection 1 mutation-score 1 predict-relapse 1