Georgakopoulos-Soares-lab/Quadrupia

Analysis of G-Quadruplexes across the tree of life

Language: Jupyter Notebook - Size: 97.3 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

EfresBR/G4iMGrinder

G4-iM Grinder is a fast, robust and highly adaptable algorithm. It is capable of locating, identifying, qualifying and quantifying DNA and RNA potential quadruplex structures, such as G-quadruplex, i-Motifs and their higher order versions.

Language: R - Size: 12.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 3

BDLab-G4/CanLncG4

CanLncG4, an intricately curated database, presents 17,666 experimentally-validated associations between 6,408 human IncRNAs (including their transcript variants) and 15 distinct types of human cancers, while predicting their G4-forming potential. It also affords insights into the lncRNA subcellular localization and lncRNA-G4 interacting partners.

Language: TypeScript - Size: 550 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

makovalab-psu/g4Discovery

Scripts for annotating/predicting G-Quadruplexes (G4s) in a genome sequence, combining pqsfinder and G4Hunter.

Language: Python - Size: 262 KB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1

makovalab-psu/mapsea

Mapping And Prediction of Shared Elements in Alignments

Language: Python - Size: 18.5 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

PollyTikhonova/ImGQfinder

The official python version of ImGQfinder: http://imgqfinder.niifhm.ru/ A tool that finds gquadruplexes and imotifs.

Language: Python - Size: 235 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 0

AnimaTardeb/G4Hunter

G4Hunter (2012_2015)- IECB - Bordeaux

Language: Python - Size: 250 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 11 - Forks: 11

LawrenceLiu023/GDAD

G4-Disease Association Database

Language: JavaScript - Size: 2.24 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

LacroixLaurent/G4Hunter

App related to G4Hunter published in Bedrat et al. NAR 2016

Language: R - Size: 296 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 2

LacroixLaurent/G4HunterPaperGit

supplementary files

Language: R - Size: 49.3 MB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1

LacroixLaurent/G4HunterTable

App to compute G4Hunter score on many sequences

Language: R - Size: 304 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

LacroixLaurent/G4HunterMultiFastaSeeker

Language: R - Size: 263 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

LacroixLaurent/G4HunterScore

Language: R - Size: 339 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

jnarayan81/quadraG

quadraG: a fast multithreading based tool to detect G-quadruplexes in genome or transcriptome sequences

Language: Perl - Size: 55.7 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

bmle/G4Pipeline

A pipeline for reporting information on G-quadruplexes relative to coding regions and non-aligned regions.

Language: Python - Size: 44.9 KB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0