gauteh/hidefix

🐕 Concurrent HDF5 and NetCDF4 reader (experimental)

Language: Rust - Size: 8.03 MB - Last synced: 8 days ago - Pushed: 7 months ago - Stars: 45 - Forks: 5

Unidata/awips2

Weather forecasting display and analysis package developed by NWS/Raytheon, released as open source software by Unidata.

Language: Java - Size: 3.59 GB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 164 - Forks: 65

zincware/MDSuite

A post-processing engine for particle simulations

Language: Python - Size: 52.2 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 36 - Forks: 7

darcamo/conan-hdf5 📦

Repository for conan HDF5 recipe

Language: Python - Size: 12.7 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

davidssmith/rawarray-rust

Rust implementation of the RawArray file format

Language: Rust - Size: 151 KB - Last synced: 8 days ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

h5io/h5io_browser

Easy navigation and data storage for HDF5

Language: Python - Size: 3.41 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 2

chunshen1987/iEBE-MUSIC

This is a repository is an overarching numerical framework for event-by-event simulations of relativistic heavy-ion collisions

Language: Python - Size: 988 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 11 - Forks: 8

grimbough/rhdf5

Package providing an interface between HDF5 and R

Language: R - Size: 23.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 59 - Forks: 24

grimbough/rhdf5filters

Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.

Language: C - Size: 6.8 MB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 5 - Forks: 6

ess-dmsc/kafka-to-nexus

(Moved to https://gitlab.esss.lu.se/ecdc/ess-dmsc/kafka-to-nexus) Writes NeXus files from experiment data streamed through Apache Kafka.

Language: C++ - Size: 8.54 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 4

rsharp-lang/R-sharp

R# language is a kind of R liked vectorized language implements on .NET environment for the bioinformatics data analysis

Language: Visual Basic .NET - Size: 228 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 24 - Forks: 5

matthiasprobst/h5RDMtoolbox

Supporting a FAIR Research Data lifecycle using Python and HDF5.

Language: Python - Size: 58.6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 6 - Forks: 0

pyiron/pyiron

pyiron - an integrated development environment (IDE) for computational materials science.

Language: Jupyter Notebook - Size: 45 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 326 - Forks: 45

cgohlke/cmapfile

Write Chimera Map (CMAP) files

Language: Python - Size: 56.6 KB - Last synced: 9 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

gjbex/training-material

A collection of code examples as well as presentations for training purposes

Language: Jupyter Notebook - Size: 184 MB - Last synced: about 2 months ago - Pushed: 9 months ago - Stars: 120 - Forks: 52

gjbex/Scientific-Python

Repository for participants of the "Scientific Python" training

Language: Jupyter Notebook - Size: 63.2 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 17 - Forks: 12

BioPhysicsUP/Full_SMS

This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.

Language: Python - Size: 52.5 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

titusjan/argos

Argos: a data viewer that can read HDF5, NetCDF4, and other file formats.

Language: Python - Size: 4.95 MB - Last synced: 19 days ago - Pushed: about 2 months ago - Stars: 171 - Forks: 25

legend-exp/legend-daq2lh5

Convert digitizer data to LEGEND HDF5

Language: Python - Size: 759 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 4

h5netcdf/h5netcdf

Pythonic interface to netCDF4 via h5py

Language: Python - Size: 3.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 173 - Forks: 31

nanoporetech/vbz_compression

VBZ compression plugin for nanopore signal data

Language: C++ - Size: 3.81 MB - Last synced: 23 days ago - Pushed: almost 2 years ago - Stars: 38 - Forks: 9

garryod/nexplore

A terminal user interface for exploring NeXus & HDF5 files

Language: Rust - Size: 72.3 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

RBigData/hdfio

A set of high-level utilities for working with hdf5.

Language: R - Size: 165 KB - Last synced: 2 months ago - Pushed: about 5 years ago - Stars: 9 - Forks: 1

TUM-I5/XdmfWriter

Small library for writing time series of unstructured meshes in XDMF/HDF5

Language: C++ - Size: 167 KB - Last synced: 2 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 3

openPMD/openPMD-CCD

A Python Module & LabView Bindings for Storing CCD Images with openPMD

Language: Python - Size: 2.49 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

ghcollin/multitables

High performance parallel reading of HDF5 files using PyTables, multiprocessing, and shared memory.

Language: Python - Size: 88.9 KB - Last synced: 15 days ago - Pushed: about 3 years ago - Stars: 13 - Forks: 2

podgorskiy/hdf5_light

Language: C - Size: 2.31 MB - Last synced: 3 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

HDFGroup/emacs

Supporting HDF5 in the world's most powerful productivity environment

Language: YASnippet - Size: 170 KB - Last synced: 29 days ago - Pushed: over 2 years ago - Stars: 5 - Forks: 0

scikit-hep/awkward-0.x 📦

Manipulate arrays of complex data structures as easily as Numpy.

Language: Python - Size: 6.42 MB - Last synced: 18 days ago - Pushed: over 3 years ago - Stars: 216 - Forks: 39

rkohrt/recursiveHdf5

This is a header only c++11 library to have a simple interface to store data of nested classes recursively to hdf5

Language: C++ - Size: 41 KB - Last synced: 3 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

cid-harvard/pandas-to-postgres

Copy Pandas DataFrames and HDF5 files to PostgreSQL database

Language: Python - Size: 64.5 KB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 53 - Forks: 12

AnBowell/AstroCastTraining

Jupyter notebooks created for use in a training session on the topic of drought forecasting via satellite:artificial_satellite:. This repo contains the scripts needed to pre-process MODIS data and apply Gaussian Processes to time-series in order to forecast VCI :chart_with_upwards_trend:.

Language: Jupyter Notebook - Size: 70.1 MB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 2

magicDGS/hdf5j

**Under development** HDF5 java Implementation

Language: Java - Size: 192 KB - Last synced: 3 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

weiji14/deepicedrain

Mapping and monitoring deep subglacial water activity in Antarctica using remote sensing and machine learning, with ICESat-2!

Language: Jupyter Notebook - Size: 29.6 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 28 - Forks: 8

salehjg/Shapenet2_Preparation

A python script to convert and down-sample mesh data into pointclouds using FPS algorithm.

Language: Python - Size: 7.81 KB - Last synced: 2 months ago - Pushed: almost 3 years ago - Stars: 13 - Forks: 0

jupyterlab/jupyterlab-hdf5

Open and explore HDF5 files in JupyterLab. Can handle very large (TB) sized files, and datasets of any dimensionality

Language: Jupyter Notebook - Size: 6.07 MB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 115 - Forks: 27

easifem/classes

Expandable And Scalable Infrastructure for Finite Element Methods, EASIFEM, is [Modern Fortran](https://fortran-lang.org) framework for solving partial differential equations (PDEs) using finite element methods. EASIFEM "eases" the efforts to develop scientific programs in Fortran.

Language: Fortran - Size: 13.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 5 - Forks: 1

eric2003/OneFLOW

LargeScale Multiphysics Scientific Simulation Environment-OneFLOW CFD

Language: C++ - Size: 110 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 239 - Forks: 79

usnistgov/jsfive

A pure javascript HDF5 reader

Language: JavaScript - Size: 1.11 MB - Last synced: 28 days ago - Pushed: over 1 year ago - Stars: 91 - Forks: 18

jmag722/vtk-hdf

Python interface for VTK HDF

Language: Python - Size: 49.8 KB - Last synced: 4 days ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

ovh/serving-runtime

Exposes a serialized machine learning model through a HTTP API.

Language: Java - Size: 1.44 MB - Last synced: 28 days ago - Pushed: 12 months ago - Stars: 12 - Forks: 3

HDFGroup/hdf5-spark-connector

HDF5 Connector for Apache Spark

Language: Scala - Size: 29.2 MB - Last synced: 29 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 1

sarastokes/AOData

Framework for adaptive optics data analysis

Language: MATLAB - Size: 23.5 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

cd10kfsu/F90GIO

general I/O interface for NetCDF, HDF4, HDF5 of fortran90 language

Language: Fortran - Size: 16.9 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 10 - Forks: 3

braunsonm/hdf5-on-spark

Import and process HDF5 files on Spark with Hadoop

Language: Scala - Size: 28.1 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

mds-islam/Multi-dimensional-Raster-TimeSeries

This script processes multi-dimensional raster data (i.e., NetCDF, HDF) with xarray and rasterio.

Language: Jupyter Notebook - Size: 16.6 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

signetlabdei/WOSS

WOSS is a framework that permits the integration of any underwater channel simulator that expects environmental data and provides a channel realization. WOSS integrates the Bellhop ray-tracing program. Thanks to its automation the user only has to specify the location in the world and the time where the simulation should take place.

Language: C++ - Size: 4.33 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 12 - Forks: 3

pyCGNS/pyCGNS

A Python package for CGNS

Language: Python - Size: 53 MB - Last synced: 7 days ago - Pushed: 3 months ago - Stars: 37 - Forks: 15

duqtools/imas2xarray

Imas2xarray is a python library for reading and writing IMAS data in hdf5 format using xarray

Language: Jupyter Notebook - Size: 881 KB - Last synced: 22 days ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

mojaveazure/loomR

An R-based interface for loom files

Language: R - Size: 327 KB - Last synced: 5 months ago - Pushed: almost 4 years ago - Stars: 58 - Forks: 14

dls-controls/hdf5filters

A collection of HDF5 filters, wrapped in a cmake build system

Language: C - Size: 119 KB - Last synced: about 2 months ago - Pushed: over 5 years ago - Stars: 5 - Forks: 0

srbhp/h5stream

C++ Header only library for HDF5 input/output

Language: C++ - Size: 1.8 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

theblackcat102/H5Record

Large dataset storage format for Pytorch

Language: Python - Size: 1.22 MB - Last synced: 8 days ago - Pushed: almost 3 years ago - Stars: 45 - Forks: 2

ghcollin/tftables

HDF5 interface for Tensorflow.

Language: Python - Size: 45.9 KB - Last synced: 7 days ago - Pushed: over 6 years ago - Stars: 73 - Forks: 10

gaomy3832/zsimparse

Python utilities to parse zsim simulation results

Language: Python - Size: 38.1 KB - Last synced: 8 days ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 0

srbhp/nrgplusplus

A c++ library for Numerical renormalization group (NRG)

Language: C++ - Size: 9.31 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 12 - Forks: 4

xtensor-stack/xtensor-io

xtensor plugin to read and write images, audio files, numpy (compressed) npz and HDF5

Language: C++ - Size: 747 KB - Last synced: 29 days ago - Pushed: 2 months ago - Stars: 84 - Forks: 27

batchatco/go-native-netcdf

A native Go implementation of NetCDF4.

Language: Go - Size: 431 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 36 - Forks: 5

CielAl/loadmat_v73

load V7.3 or above mat files in python.

Language: Python - Size: 8.79 KB - Last synced: 24 days ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

garrison/eigen3-hdf5

Bare-bones hdf5 serialization of Eigen matrices and vectors

Language: C++ - Size: 48.8 KB - Last synced: 3 months ago - Pushed: almost 3 years ago - Stars: 61 - Forks: 18

angulartist/Keras-HDF5-ImageDataGenerator

Blazing fast HDF5 Image Generator for Keras :zap:

Language: Python - Size: 16 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 13 - Forks: 4

alejandro-isaza/HDF5Kit

HDF5 for iOS and OS X

Language: Swift - Size: 12.5 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 68 - Forks: 29

garrettmflynn/hdf5-io

Simple utility for reading / writing HDF5 files

Language: TypeScript - Size: 8.27 MB - Last synced: 9 days ago - Pushed: 10 months ago - Stars: 3 - Forks: 0

pkestene/ramsesGPU

Astrophysics MHD simulation code optimized for large cluster of GPU

Language: C++ - Size: 5.81 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 54 - Forks: 10

nghia-vo/broh5

Browser-based GUI HDF Viewer https://broh5.readthedocs.io

Language: Python - Size: 665 KB - Last synced: 2 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 2

julienvienne/docker-netcdf

Netcdf docker with hdf5 support + CDO tools

Language: Dockerfile - Size: 54.5 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

dlr-eoc/UKIS_sat2h5

Convert geospatial satellite images to H5 arrays and back keeping the spatial extent.

Language: Python - Size: 518 KB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

lucasvr/hdf5-udf

User-Defined Functions for HDF5

Language: C++ - Size: 2.09 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 21 - Forks: 5

RichardScottOZ/Kerchunk-geoh5

Examples of reading data from cloud stored geoh5 / Geoscience Analyst files

Language: Jupyter Notebook - Size: 120 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

BrainDynamicsUSYD/SpikeNet

A computational platform for studying spiking neural circuits developed by Dr. Pulin Gong's group at University of Sydney.

Language: MATLAB - Size: 20.3 MB - Last synced: 6 months ago - Pushed: 11 months ago - Stars: 14 - Forks: 5

KxSystems/hdf5

A library for converting between kdb+ and HDF5 data

Language: C - Size: 401 KB - Last synced: 2 months ago - Pushed: 7 months ago - Stars: 13 - Forks: 8

iocomp-org/iocomp

I/O server framework to enable abstracted I/O back-ends while giving capability to map seperate processes as dedicated I/O servers.

Language: C - Size: 2.09 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

innerlee/setup

Setup a new machine without sudo!

Language: Shell - Size: 269 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 398 - Forks: 83

iagappel/turbx

Tools for analysis of turbulent flow datasets

Language: Python - Size: 1010 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

MetalKnight/woss-ns3

WOSS is a framework that permits the integration of any underwater channel simulator that expects environmental data and provides a channel realization. WOSS integrates the Bellhop ray-tracing program. Thanks to its automation the user only has to specify the location in the world and the time where the simulation should take place.

Language: C++ - Size: 73.2 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 25 - Forks: 7

lasersonlab/ndarray.scala

N-dimensional arrays, with Zarr and HDF5 integrations

Language: Scala - Size: 9.53 MB - Last synced: 4 months ago - Pushed: over 5 years ago - Stars: 14 - Forks: 3

oinanoanalysis/h5oina

Oxford Instruments NanoAnalysis HDF5 File Specification

Size: 66.4 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 11 - Forks: 5

koustav-pal/HiCBricks

HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.

Language: R - Size: 10.3 MB - Last synced: 8 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 4

norxander/meta-convnet

Recipes to generate many tools in order to get the Caffe library running on the DE1-SoC board

Language: C - Size: 26.4 KB - Last synced: 8 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 1

steven-varga/h5cpp

C++17 templates between [stl::vector | armadillo | eigen3 | ublas | blitz++] and HDF5 datasets

Language: C++ - Size: 21.9 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 139 - Forks: 32

Parallel-NetCDF/E3SM-IO

Performance Benchmark of E3SM's I/O Kernel

Language: C++ - Size: 25.8 MB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 13 - Forks: 9

NU-CUCIS/ph5concat

Parallel Data Concatenation for High Energy Physics Data Analysis

Language: C++ - Size: 1.57 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 4 - Forks: 4

jterwin/HDF5_utils

my own Fortran high level interface for HDF5

Language: Fortran - Size: 83 KB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 29 - Forks: 6

ess-dmsc/ess_file_formats

ESS data file formats repository

Size: 3.11 MB - Last synced: 8 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

gauteh/dars

𓃢 A fast and light OPeNDAP server

Language: Rust - Size: 12.6 MB - Last synced: 7 days ago - Pushed: about 1 year ago - Stars: 19 - Forks: 2

DataLib-ECP/vol-log-based

Log VOL - an HDF5 VOL connector for storing data in a time-log layout in files

Language: C++ - Size: 3.49 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 7

inayatkh/tensorflowCNNfromTrainingToTesting

This is a very Simple example of showing how to build image dataset from your own collection of images, how to train multiple class classifier using tensorflow CNN and how to predict the class of an object in an unseen image. This code is designed so that a newbie user become able to train a tensorflow CNN model using his limited CPU resources. By loading small batches of images in the HDF5 data format is the key for doing so.

Language: Python - Size: 147 KB - Last synced: 9 months ago - Pushed: over 6 years ago - Stars: 18 - Forks: 7

aditya-gourishetty/forecasting-using-satellite-imagery

This is my course project for EE404 Soft Computing

Size: 25 MB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

cbusta/hdf5-wrapper

Provides a Fortran wrapper for HDF5

Language: Fortran - Size: 19.5 KB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

sg-s/how-to-save-data-in-matlab

Language: XSLT - Size: 65.4 KB - Last synced: 9 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 1

mtav/h5utils

The tools in the h5utils package allow converting other formats from and to HDF5 and to visualize HDF5 files.

Language: Python - Size: 2.13 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 2

hyoklee/kerchunk

Kerchunk Study

Size: 888 MB - Last synced: 4 months ago - Pushed: 10 months ago - Stars: 4 - Forks: 0

ccr/ccr

Community Codec Repository

Language: C - Size: 887 KB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 16 - Forks: 4

valGavin/MFCC_Extractor_TarsosDSP

MFCCs extractor utilizing TarsosDSP library and save the results into .h5 file for further use.

Language: Java - Size: 393 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

hpc-io/vol-pdc

HDF5 PDC VOL Connector

Language: C - Size: 177 KB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 1

paulmelis/uhdf5

A minimalistic C++ API for working with HDF5 files

Language: C++ - Size: 22.5 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

l3pilot/l3pilot-cdf

L3Pilot Common Data Format

Language: Java - Size: 11.4 MB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 10 - Forks: 2

temp3rr0r/Longsword-Stance-RESTful-Service

Longsword Stance RESTful Service Working demo: https://www.youtube.com/watch?v=v7hvOyPQ0EM Longsword Stance RESTful Service: Invokes prediction results with real-time multivariate time series data. Using Flask and python, the pre-trained bidirectional LSTM deep learning model is loaded to memory. RESTful post request containing real-time rows of IMU data can be used to classify the longsword movement stance. Information on the classification confidence and execution time in milliseconds is also provided.

Language: Python - Size: 76.3 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 10 - Forks: 5

mpickem/hdf5_wrapper

A minimalist hdf5 wrapper for Fortran90/95.

Language: Fortran - Size: 114 KB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 4

ct-clmsn/HighFive Fork of BlueBrain/HighFive

HighFive - Header-only C++ HDF5 interface

Language: C++ - Size: 268 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0