GitHub topics: imputation-accuracy
selfdecode/rd-imputation-accuracy
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
Language: Python - Size: 23.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 21 - Forks: 3
cth/grspwr
power calculator for Genetic Risk Scores (GRS)
Language: R - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0
stefanedwards/Siccuracy
Stefan's imputation accuracy package
Language: HTML - Size: 601 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 0
sonisarm/Technical-validation-of-imputation
Asses the validity of imputation of your low-coverage samples
Language: R - Size: 11.4 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
inzilico/imputeqc
An R package to estimate the quality of imputation of genotypes.
Language: R - Size: 584 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 3
