broadinstitute/ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Language: R - Size: 10.7 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 182 - Forks: 87

Zilong-Li/lcWGS-imputation-workflow

Imputation workflow for low coverage whole genome sequencing data

Language: Python - Size: 121 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 9 - Forks: 0

Zilong-Li/phaseless

Imputation and Admixture for lcWGS in one goal

Language: C++ - Size: 12.8 MB - Last synced at: 26 days ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

renatosantos98/GLIMPSE-low-coverage-WGS-imputation

Supporting data for "Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients"

Language: Python - Size: 28.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

Zilong-Li/BaseVarC

The repo was not under development. Check out angsd toolkit for low depth data analyses.

Language: C++ - Size: 47.1 MB - Last synced at: 26 days ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 5

srubinacci/imputation-ukb-ref-panel

Genotype imputation pipelines for the UK Biobank Research Analysis Platform

Language: Shell - Size: 34.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

marcusnizalvarez/LCVCFtools

LCVCFtools is a program designed for working with VCF files generated from low-coverage whole genome sequencing

Language: C++ - Size: 52.7 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

sonisarm/Technical-validation-of-imputation

Asses the validity of imputation of your low-coverage samples

Language: R - Size: 11.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

MaddalenaCella/nf-lcWGS-mapping-and-imputation

Two Nextflow pipelines for mapping and imputation of non-human samples sequenced at low-coverage.

Language: Nextflow - Size: 457 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

Green-Lab-MDACC/lpWGS_pipeline

Language: C - Size: 135 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

Genetalks/stitch-diploid

Fast genotype imputation for large cohorts of lcWGS samples.

Size: 13.5 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0