Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: diploid
SAMtoBAM/PhasedDiploidGenomeAssemblyPipeline
Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
Language: R - Size: 494 KB - Last synced: 1 day ago - Pushed: 11 months ago - Stars: 18 - Forks: 1
jadedavis5/diploidocus_nextflow
Files to generate input files and run diploidocus on Setonix
Language: Shell - Size: 101 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
edgardomortiz/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Language: Python - Size: 136 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 232 - Forks: 80
marcusnizalvarez/LCVCFtools
LCVCFtools is a program designed for working with VCF files generated from low-coverage whole genome sequencing
Language: C++ - Size: 52.7 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
FJBiocode/ShortSequenceRastreator
Short Sequence Rastreator allows genetic diversity analysis and preparation of input files for other softwares such as STRUCTURE, DARwin and SPAGeDi.
Language: Python - Size: 25.4 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
TomMakesThings/Wright-Fisher-Simulator
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
Language: Jupyter Notebook - Size: 22.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
eldonb/evolution_diploid_population
Evolution of a diploid population evolving under a form of viability selection and (optionally) sweepstakes reproduction
Language: CWeb - Size: 1.2 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
