GitHub topics: phylip
evolbioinfo/goalign
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
Language: Go - Size: 1.56 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 85 - Forks: 8
btmartin721/SNPio
API to read, write, and filter DNA sequence alignment files
Language: Python - Size: 168 MB - Last synced at: 3 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1
edgardomortiz/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Language: Python - Size: 136 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 232 - Forks: 80
btmartin721/makePopMap
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
Language: Python - Size: 50.8 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
kyungtaekLIM/seqlim
Easy Manipulation of Multiple Sequence Alignments (Concatenation and Format Conversion)
Language: Python - Size: 1.08 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1
cnr-ibba/nf-treemix
A nextflow pipeline which executes treemix on a population of interest
Language: Nextflow - Size: 111 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
btmartin721/file_converters
File conversion scripts for DNA sequence data
Language: Python - Size: 55.7 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1
adamallo/phylip Fork of dunnlab/phylip
Repository with Phylip 3.697 with binaries for Apple Silicon
Language: C - Size: 7.28 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
btmartin721/phylip2eigenstrat
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
Language: Python - Size: 238 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 1
jamesjcai/MBEToolbox
MBEToolbox: Matlab toolbox for molecular evolution
Language: C - Size: 5.18 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 3
