GitHub topics: structure-alignment
anon0411/g-series-alignment-pathways
Structure-based alignment experiments in perturbed quantum circuits. Extension of G-series with no explicit intent insertion.
Language: Jupyter Notebook - Size: 53.7 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0
BGI-SynBio/PyMOL-PUB
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
Language: Python - Size: 127 MB - Last synced at: 10 days ago - Pushed at: 7 months ago - Stars: 69 - Forks: 4
btmartin721/SNPio
API to read, write, and filter DNA sequence alignment files
Language: Python - Size: 168 MB - Last synced at: 4 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1
biojava/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Language: Java - Size: 48.8 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 606 - Forks: 391
BGSU-RNA/RNA-3D-correspondence
Web application for comparing and visualising RNA 3D motifs across many 3D structures
Language: Python - Size: 38.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
BEAM-Labs/RTM-align
Official code of RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment.
Language: C++ - Size: 78.1 KB - Last synced at: 4 months ago - Pushed at: 12 months ago - Stars: 5 - Forks: 0
RBVI/minrms
A bioinformatics algorithm for generating sequence alignments from 3D structures
Language: C++ - Size: 534 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 1
shiming-chen/HSVA
Official PyTorch Implementation of HSVA (NeurIPS'21)
Language: Python - Size: 5.33 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 21 - Forks: 7
nifets/TorusEvol
This is a Bayesian model for sequence and structure alignment of multiple proteins in a star phylogeny. The structural divergence across time is modelled by letting the dihedral angles of the backbones evolve according to a diffusion over the flat square torus.
Language: Julia - Size: 19.7 MB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
cspinetta/bio-tp
TP Bioinformatica - UTN FRBA
Language: Scala - Size: 14.2 MB - Last synced at: 5 months ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
