Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: haploid
edgardomortiz/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Language: Python - Size: 136 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 232 - Forks: 80
tseemann/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Language: Perl - Size: 124 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 408 - Forks: 111
mccoy-lab/transmission-distortion
Analysis scripts for "A method for low-coverage single-gamete sequence analysis demonstrates adherence to Mendel's first law across a large sample of human sperm" https://elifesciences.org/articles/76383
Language: R - Size: 68.6 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0
davisem/Iudex
Haploid genetic screening pipeline
Language: Python - Size: 6.14 MB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1
TomMakesThings/Wright-Fisher-Simulator
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
Language: Jupyter Notebook - Size: 22.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
clstacy/yeastKODoublingTimes
Available at: https://clstacy.github.io/yeastKODoublingTimes/ . Doubling time estimates for haploid KO library, data from doi: 10.1093/g3journal/jkac240
Language: HTML - Size: 5.31 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
supragya/WrightFisherHaploidSimulation
Wrigh Fisherman Simulation for Haploid population
Language: HTML - Size: 1.55 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
