Ecosyste.ms: Repos

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GitHub topics: vcf-format

Modify KASP assay calls to a VCF format

Language: Shell - Size: 62.5 KB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 0

Learning the Variant Call Format

Language: Perl - Size: 42.6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 135 - Forks: 40

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Language: Python - Size: 136 KB - Last synced: 7 months ago - Pushed: 10 months ago - Stars: 232 - Forks: 80

BioC++ Input/Output library

Language: C++ - Size: 1.03 MB - Last synced: 9 months ago - Pushed: almost 1 year ago - Stars: 8 - Forks: 6

A command-line parser for VCF files designed for population genetics analyses.

Language: Java - Size: 2.34 MB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).

Language: Perl - Size: 93.8 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

Convert an standard VCF to JSON format

Language: Python - Size: 1.95 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1

Language: Python - Size: 39.1 KB - Last synced: 26 days ago - Pushed: over 5 years ago - Stars: 1 - Forks: 1

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