GitHub topics: copy-number
HCL-HUBL/KILDA
KILDA (KIv2 Length Determined from a kmer Analysis) provides an alignment-free estimation of the number of KIV2 (Kringle IV type 2) repeats from FASTQ files.
Language: Python - Size: 13.3 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 0
lima1/PureCN
Copy number calling and variant classification using targeted short read sequencing
Language: R - Size: 19 MB - Last synced at: 1 day ago - Pushed at: 2 months ago - Stars: 136 - Forks: 33
TNTurnerLab/CNPI
Software for Rapid Analyses of Human Copy Number Data
Language: C++ - Size: 106 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 4 - Forks: 0
broadinstitute/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Language: R - Size: 10.7 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 182 - Forks: 87
HenrikBengtsson/aroma.affymetrix
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
Language: R - Size: 4.05 MB - Last synced at: 18 days ago - Pushed at: 4 months ago - Stars: 10 - Forks: 3
polyactis/Accucopy
Accucopy is a computational method that infers Allele-specific Copy Number alterations from low-coverage low-purity tumor sequencing Data.
Language: C++ - Size: 1.04 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 4
baudisgroup/segment-liftover
Lifterover copy number segments in whole
Language: Python - Size: 4.99 MB - Last synced at: 27 days ago - Pushed at: over 1 year ago - Stars: 23 - Forks: 4
adeschen/CNprep Fork of KrasnitzLab/CNprep
Processing DNA Copy Number (CN) Data for Detection of CN Events
Language: R - Size: 6.48 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
aleighbrown/facets_snakemake
Pipeline for running the FACETS copy number caller using Snakemake
Language: R - Size: 29.3 KB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1
ndbrown6/CNtu
Copy Number tree utilities (CNtu)
Language: R - Size: 213 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
gustaveroussy/EaCoN
Easy Copy Number !
Language: R - Size: 3.1 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 19 - Forks: 13
samabs/conliga
Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
Language: C++ - Size: 5.1 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 1
ndbrown6/MSK-GRAIL-TECHVAL
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
Language: R - Size: 170 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 19 - Forks: 10
KrasnitzLab/CNprep
CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Language: R - Size: 5.99 MB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 2
ndbrown6/GAP
Genome Alteration Print (GAP)
Language: R - Size: 254 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1
HenrikBengtsson/CostelloPSCNSeq
R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data
Language: R - Size: 128 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 2