GitHub topics: reproduction-number
epiforecasts/EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
Language: R - Size: 97 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 126 - Forks: 36
epiverse-trace/tutorials-middle
Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.
Language: R - Size: 137 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 4 - Forks: 2
svilens/covid-bulgaria
Dashboard for tracking and analyzing the COVID-19 outbreak in Bulgaria
Language: Python - Size: 74.2 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1
EpiForeSITE/software
Software development at ForeSITE
Language: R - Size: 7.81 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0
lo-hfk/epyestim
Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers
Language: Jupyter Notebook - Size: 528 KB - Last synced at: 23 days ago - Pushed at: over 4 years ago - Stars: 22 - Forks: 8
CMU-SAFARI/COVIDHunter
COVIDHunter 🦠:construction:: An accurate and flexible COVID-19 outbreak simulation model that forecasts the strength of future mitigation measures and the numbers of cases, hospitalizations, and deaths for a given day, while considering the potential effect of environmental conditions. Described by Alser et al. (preliminary version at https://arxiv.org/abs/2102.03667 and https://doi.org/10.1101/2021.02.06.21251265).
Language: Swift - Size: 8.6 MB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 0
epiforecasts/covid-rt-estimates
National and subnational estimates of the time-varying reproduction number for Covid-19
Language: R - Size: 7.08 GB - Last synced at: 3 days ago - Pushed at: almost 3 years ago - Stars: 34 - Forks: 17
ResearchLuxembourg/restimator
Real time estimation of epidemic Effective Reproduction Number for Luxembourg
Language: Julia - Size: 3.62 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 3
epiforecasts/covid.german.forecasts
Comparing crowd sourced and model derived forecasts of Covid-19 for Germany and Poland
Language: TeX - Size: 3.38 GB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 5 - Forks: 1
sanguedemonstro/reproduction-number-covid19-santa-catarina
O Ãndice de contágio do COVID-19 regionalizado, por estados, municÃpios e até bairros, em tempo real, pode apoiar a tomada de decisões do poder público sobre como conter o contágio e como conduzir a retomada da atividade econômica de forma segura.
Language: Jupyter Notebook - Size: 4.42 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
maxscheijen/rt-live-netherlands
📈 Real-time effective reproduction number for COVID-19 in the Netherlands
Language: Python - Size: 11.3 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
OliverMaerz/Covid-19
Covid-19, New Cases, Deaths, Recovered, Death Rate, Reproduction Number (R)
Language: Jupyter Notebook - Size: 70 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
mshfd/reproduction-number
Compute the effective reproduction number for an epidemic based on positive test ratio or absolute number of cases.
Language: Python - Size: 58.3 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
epiforecasts/covid19.sgene.utla.rt
Local area reproduction numbers and S-gene target failure.
Language: R - Size: 64.2 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 3
mishra-lab/covid-r
Estimating the effective reproduction number Re(t) for COVID19 in GTA, Canada
Language: R - Size: 4.36 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0
epiforecasts/rt-comparison-uk-public
Evaluating the use of the reproduction number as an epidemiological tool, using spatio-temporal trends of the Covid-19 outbreak in England.
Language: R - Size: 4.24 GB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 1
mjonyh/bd_herd_immunity
Herd Immunity Analyses of Bangladesh due to the SERS-CoV-2
Language: Python - Size: 43.3 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
epiforecasts/covid-rt-brazil-subregional
Subregional estimates of Rt for Covid-19 in Brazil
Language: R - Size: 159 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1
menon99/Indiacovid19
Source code of covid-india-analysis, a project to keep track of covid19 in India
Language: Java - Size: 4.33 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1
fvalka/r_estimate
Estimation of COVID 19 R_t,tau for Austria
Language: CSS - Size: 190 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
tsaiaditya/Indiacovid19 Fork of menon99/Indiacovid19
Source code of covid-india-analysis, a project to keep track of covid19 in India
Size: 4.1 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
